View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_59 (Length: 212)

Name: NF19210_low_59
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_59
NF19210_low_59
[»] chr2 (6 HSPs)
chr2 (12-190)||(32616009-32616207)
chr2 (22-137)||(32634449-32634564)
chr2 (143-187)||(42852634-42852678)
chr2 (144-187)||(19243627-19243670)
chr2 (143-187)||(15370255-15370299)
chr2 (143-187)||(22878192-22878236)
[»] chr1 (3 HSPs)
chr1 (143-182)||(44815235-44815274)
chr1 (143-187)||(24460333-24460377)
chr1 (143-187)||(27807209-27807253)
[»] chr7 (1 HSPs)
chr7 (143-189)||(33894719-33894765)
[»] chr8 (1 HSPs)
chr8 (143-187)||(2364392-2364436)
[»] chr6 (2 HSPs)
chr6 (143-187)||(24973959-24974003)
chr6 (143-183)||(32171565-32171605)
[»] chr4 (1 HSPs)
chr4 (143-187)||(30770983-30771027)
[»] chr3 (3 HSPs)
chr3 (143-187)||(21872227-21872271)
chr3 (143-187)||(22667497-22667541)
chr3 (143-187)||(22724136-22724180)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 32616207 - 32616009
Alignment:
Q  12 catcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccagaaataagttgtcccttcaattcacgttcttttctcacgtgttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32616207 catcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccggaaataagttgtcccttcaattcacgttcttttctcacgtgttc 32616108  T
Q  112 aatccatggtttgataaaactctgtttagaa--------------------ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgg 190  Q
    |||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32616107 aatccatggtttgataaaactctgtttagaatacaataagattgtattgagttatttgaacttatcagctgacataagcatttgtgagactgtttgtgg 32616009  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 32634564 - 32634449
Alignment:
Q  22 gagcatcctaccaaccatatcattctgagcatgacttaagactccagaaataagttgtcccttcaattcacgttcttttctcacgtgttcaatccatggt 121  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||  ||| ||||||||||||    
T  32634564 gagcagcctaccaaccctatcactctgagcatgacttaagactccagaaataagatgttctttcaattcacgctcttttctcgtgtgctcaatccatggt 32634465  T
Q  122 ttgataaaactctgtt 137  Q
    ||||||||||||||||    
T  32634464 ttgataaaactctgtt 32634449  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 42852634 - 42852678
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||    
T  42852634 ttatttgaacttatctgctggcataagcacttgtgagactgtttg 42852678  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 19243670 - 19243627
Alignment:
Q  144 tatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  19243670 tatttgaacttatctactgacataagcatttctgagactgtttg 19243627  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 15370255 - 15370299
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||| ||||||  ||| ||||||||||||||||||||||||    
T  15370255 ttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22878236 - 22878192
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22878236 ttatttgagcttatccactgacataagcacttgtgagactgtttg 22878192  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 44815235 - 44815274
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagact 182  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  44815235 ttatttgaacttatctactgacataagcatttgtgagact 44815274  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 24460333 - 24460377
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||||||||||  ||||||| |||| |||||||||||||||    
T  24460333 ttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 27807253 - 27807209
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||||    
T  27807253 ttatttgaacttttctactgacataagcatttgtaagactgtttg 27807209  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 33894765 - 33894719
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtg 189  Q
    |||||||| |||||||  ||||||||||| |||||||||||||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgagactgtttgtg 33894719  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 2364392 - 2364436
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||||||||||  |||||||||| | |||||||||||||||    
T  2364392 ttatttgaacttatcttctgacataagtacttgtgagactgtttg 2364436  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 24973959 - 24974003
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    ||||||||||||||| ||||||||||||| |||| ||| ||||||    
T  24973959 ttatttgaacttatctgctgacataagcacttgtaagattgtttg 24974003  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 32171605 - 32171565
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactg 183  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  32171605 ttatttgaacttatttactgacataagcatttgtgagactg 32171565  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 30771027 - 30770983
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    ||||||||| |||||  ||||||||||||||||| ||||||||||    
T  30771027 ttatttgaatttatccactgacataagcatttgtaagactgtttg 30770983  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 21872227 - 21872271
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  21872227 ttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22667541 - 22667497
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22667541 ttatttgagcttatctactgacataagcacttgtgagactgtttg 22667497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 22724180 - 22724136
Alignment:
Q  143 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 187  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22724180 ttatttgagcttatctactgacataagcacttgtgagactgtttg 22724136  T

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