View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_6 (Length: 553)

Name: NF19210_low_6
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_6
NF19210_low_6
[»] chr8 (3 HSPs)
chr8 (13-497)||(3730027-3730511)
chr8 (25-81)||(18464743-18464800)
chr8 (20-75)||(22935504-22935560)
[»] chr4 (3 HSPs)
chr4 (95-547)||(37011205-37011657)
chr4 (150-524)||(29689322-29689694)
chr4 (17-370)||(29688941-29689312)
[»] chr7 (2 HSPs)
chr7 (95-368)||(21292000-21292274)
chr7 (22-82)||(9174915-9174976)
[»] chr6 (2 HSPs)
chr6 (13-401)||(11121078-11121471)
chr6 (22-80)||(1122232-1122291)
[»] chr2 (2 HSPs)
chr2 (408-526)||(20125155-20125273)
chr2 (20-75)||(7647600-7647656)
[»] chr1 (2 HSPs)
chr1 (13-81)||(32829235-32829303)
chr1 (13-81)||(5965120-5965188)
[»] chr5 (2 HSPs)
chr5 (20-75)||(641018-641074)
chr5 (22-81)||(16044475-16044535)
[»] chr3 (2 HSPs)
chr3 (17-63)||(4545738-4545784)
chr3 (96-144)||(1576083-1576131)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Complemental strand, 3730511 - 3730027
Alignment:
Q  13 cacagacaaattcttgaaagtggggagtggattcgaacgccaacatggtaataacgaatccacgcgcactgcgatgatcatcattaatcagctatttctg 112  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  3730511 cacagacaaattcttgaaagtggggagtggatttgaacgccaacatggtaataacgaatccacgcgcactacgatgatcatcattaatcagccatttctg 3730412  T
Q  113 gccgacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaacctttaccaatggcaatgaatccgaccaccaacatggtatcgaatct 212  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||    
T  3730411 gccaacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaacctttaccaatggcaatgaatccgaccgcaaacacggtatcgaatct 3730312  T
Q  213 acccaccaaccactaactgagacacaagacaacaagtttgtacgataatttctagcatatcaatcaaaatcctccctcaaatagaactgccattcgacat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3730311 acccaccaaccactaactgagacacaagacaacaagtttgtacgacaatttctagcatatcaatcaaaatcctccctcaaatagaactgtcatttgacat 3730212  T
Q  313 aactcacacgctcagaacacgaaagtgaagatctgagtcgagtcacaccaacccgtgcgggttttgccccaaaatgcgagaaccaaccaaatatcagaag 412  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  3730211 aactcacacgctcggaacacgaaagtgaagatctgagtcgagtcacaccaacccgtgcaggttttgccccaaaatacgagaaccaaccaaatatcagaag 3730112  T
Q  413 atccttcaaaaagaaaccacaactgacaaagatatgccaaacaaaaacatatcatagttgtatcaaaaacaaacacagaaccggc 497  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3730111 atccttcaaaaagaaaccacaaccgacaaagatatgccaaacaaaaacatatcatagttgtatcaaaaacaaacacagaaccggc 3730027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 18464800 - 18464743
Alignment:
Q  25 cttgaaagtggggagtggattcgaacgccaacatggt-aataacgaatccacgcgcac 81  Q
    |||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  18464800 cttgaaagtggggagtggattcgaccgccgacacggtaaataacgaatccacgcgcac 18464743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 22935560 - 22935504
Alignment:
Q  20 aaattcttgaaagtggggagtggattcgaacgccaacatggta-ataacgaatccac 75  Q
    ||||||||||  ||||||||||||||||| |||||||| ||||  ||||||||||||    
T  22935560 aaattcttgagggtggggagtggattcgaccgccaacacggtagttaacgaatccac 22935504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 95 - 547
Target Start/End: Original strand, 37011205 - 37011657
Alignment:
Q  95 attaatcagctatttctggccgacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaacctttaccaatggcaatgaatccgaccac 194  Q
    |||||||||| |||| | ||| |||| ||||||||| |||||||| || ||||| ||||||  || | |||||||||||||||||||||||||||||| |    
T  37011205 attaatcagccatttttagcccacaaaaagcgatcacacaagcacaacataggcacaagtctaaaatccaacctttaccaatggcaatgaatccgaccgc 37011304  T
Q  195 caacatggtatcgaatctacccaccaaccactaactgagacacaagacaacaagtttgtacgataatttctagcatatcaatcaaaatcctccctcaaat 294  Q
    ||||| | || |||||| || ||||||||||| ||| |||||| | ||| |||||||||||||  ||||||||| ||||||||  |||||||| ||||||    
T  37011305 caacacgatagcgaatccactcaccaaccactcactaagacaccatacatcaagtttgtacgaccatttctagcctatcaatctgaatcctccatcaaat 37011404  T
Q  295 agaactgccattcgacataactcacacgctcagaacacgaaagtgaagatctgagtcgagtcacaccaacccgtgcgggttttgccccaaaatgcgagaa 394  Q
     || || |||| | ||| ||| |||||||||| ||  | |||||| |||||  || ||| |||||||||| ||||    ||||  |||||||  ||||||    
T  37011405 ggagctaccatccaacaaaacccacacgctcaaaatccaaaagtgtagatcatagacgaatcacaccaactcgtggtcttttttgcccaaaacacgagaa 37011504  T
Q  395 ccaaccaaatatcagaagatccttcaaaaagaaaccacaactgacaaagatatgccaaacaaaaacatatcatagttgtatcaaaaacaaacacagaacc 494  Q
    ||| | | || ||||||||||| || ||||||| ||||||  ||||||||||||||| ||||| |||||||    ||||  |||| |||||||||||||     
T  37011505 ccagctagatctcagaagatccgtcgaaaagaacccacaatcgacaaagatatgccagacaaagacatatctcgtttgtgacaaacacaaacacagaact 37011604  T
Q  495 ggccaccacacgtcgccgtcgtgtttgtgtgtaatcaaaacaaaacagaaccg 547  Q
     ||||||||||| | ||||| | ||||||||| |||||| |||||||||||||    
T  37011605 agccaccacacgccaccgtcatttttgtgtgtcatcaaatcaaaacagaaccg 37011657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 150 - 524
Target Start/End: Original strand, 29689322 - 29689694
Alignment:
Q  150 caagtccgaactacaacctttaccaatggcaatgaatccgaccaccaacatggtatcgaatctacccaccaaccactaactgagacacaagacaacaagt 249  Q
    |||||| || || ||||||| ||||||||||||||| |||||| |||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||||||    
T  29689322 caagtctgagctccaaccttcaccaatggcaatgaa-ccgaccgccaacacggtagcgaatccacctaccaaccactcactgacacactagacaacaagt 29689420  T
Q  250 ttgtacgataatttctagcatatcaatcaaaatcctccctcaaatagaactgccattcgacataactcacacgctcagaacacgaaa--gtgaagatctg 347  Q
    ||||||| | |||| |||  |||||||   |||||||| ||||||||| | ||||| ||||||||| ||||| ||| |||   ||||  ||| |||| ||    
T  29689421 ttgtacggtcatttttagtctatcaatttgaatcctccgtcaaatagagccgccatccgacataacccacacactcggaagctgaaaatgtgcagatttg 29689520  T
Q  348 agtcgagtcacaccaacccgtgcgggttttgccccaaaatgcgagaaccaaccaa----atatcagaagatccttcaaaaagaaaccacaactgacaaag 443  Q
    |||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||    |||||||||||||| || |||| || ||||  | |||||||    
T  29689521 agtcgaatcacaccaacccgtgcaggttttg-cccaaaacgcgagaaccaaccaaccagatatcagaagatccgtcgaaaaaaacccaccgccgacaaag 29689619  T
Q  444 atatgccaaacaaaaacatatcatagttgtatcaaaaacaaacacagaaccggccaccacacgtcgccgtcgtgtttgtgt 524  Q
    |||||||||||||| ||||| |    ||||      |||||||| |||||| |||||||||||||| ||| ||||||||||    
T  29689620 atatgccaaacaaagacatacctcgtttgt------aacaaacatagaaccagccaccacacgtcgtcgttgtgtttgtgt 29689694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 29688941 - 29689312
Alignment:
Q  17 gacaaattcttgaaagtggggagtggattcgaacgccaacatggtaataa-cgaatccacgcgcac-----------tgcgatgatcatca-----ttaa 99  Q
    ||||||| |||||||||||||||||| ||||| |||||||| |||||| | |||||||||||||||           ||||||||| | ||     ||||    
T  29688941 gacaaatgcttgaaagtggggagtgggttcgaccgccaacacggtaattagcgaatccacgcgcaccaatcgtttactgcgatgattaacaacaaattaa 29689040  T
Q  100 tcagctatttctggccgacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaacctttaccaatggcaatgaatccgaccaccaaca 199  Q
    ||||  |||||  ||| |||||| | | |||||| ||||| |||||||| |||||| || || ||||||| ||||||||||||||| |||| | ||||||    
T  29689041 tcagtcatttccagcccacaacatgtggtcatactagcacaacctaggcacaagtctgagctccaaccttcaccaatggcaatgaa-ccgatcgccaaca 29689139  T
Q  200 tggtatcgaatctacccaccaaccactaactgagacacaagacaacaagtttgtacgataatttctagcatatcaatcaaaatcctccctcaaatagaac 299  Q
     |||| || ||| ||| |||||||||| ||||| |||| |||||||||||||||||| | |||| |||  |||||||   |||||||| ||||||||| |    
T  29689140 cggtagcggatccacctaccaaccactcactgacacactagacaacaagtttgtacggtcatttttagtctatcaatttgaatcctccgtcaaatagagc 29689239  T
Q  300 tgccattcgacataactcacacgctcagaacacgaaa--gtgaagatctgagtcgagtcacaccaacccgtgc 370  Q
     ||||| ||||||||| ||||| ||| |||   ||||  ||| |||| |||||||| ||||||||||||||||    
T  29689240 cgccatccgacataacccacacactcggaagctgaaagtgtgcagatttgagtcgaatcacaccaacccgtgc 29689312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 95 - 368
Target Start/End: Complemental strand, 21292274 - 21292000
Alignment:
Q  95 attaatcagctatttctggccgacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaaccttt-accaatggcaatgaatccgacca 193  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||| | ||||||  ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  21292274 attaatcagccatttctagcccacatcaagcgatcatacaagcacaaactaggcataagtctgaactccaaccttttaccaatggaaatgaatccgacca 21292175  T
Q  194 ccaacatggtatcgaatctacccaccaaccactaactgagacacaagacaacaagtttgtacgataatttctagcatatcaatcaaaatcctccctcaaa 293  Q
    | |||| || | ||| || |||||||||||||| ||||||||| |||||| |||||||||||||  |||| | ||  ||||||    ||||||| |||||    
T  21292174 cgaacacggcagcgagtccacccaccaaccactcactgagacagaagacatcaagtttgtacgactatttttggcccatcaatttggatcctccgtcaaa 21292075  T
Q  294 tagaactgccattcgacataactcacacgctcagaacacgaaagtgaagatctgagtcgagtcacaccaacccgt 368  Q
    | || | ||||| ||||||||| |||| |||| |||| |||||||| | | |||| || | ||||||||||||||    
T  21292074 tggagcggccatccgacataacccacatgctcggaacccgaaagtgcataactgattcaaatcacaccaacccgt 21292000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 9174976 - 9174915
Alignment:
Q  22 attcttgaaagtggggagtggattcgaacgccaacatggtaa-taacgaatccacgcgcact 82  Q
    |||||||| |||||||||| ||||| | |||||||||||||| |||| ||||||| ||||||    
T  9174976 attcttgagagtggggagttgattcaaccgccaacatggtaattaacaaatccacacgcact 9174915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 11121471 - 11121078
Alignment:
Q  13 cacagacaaattcttgaaagtggggagtggattcgaacgccaacatggtaat-aacgaatccacgcgcac-----------tgcgatgatcatcattaat 100  Q
    |||||||| || |||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||           |||||||||||      ||    
T  11121471 cacagacagatgcttgaaagtggggagtggattcgaccgccaacacggtaattaacgaatccacacgcaccaaccgtttactgcgatgatca------at 11121378  T
Q  101 cagctatttctggccgacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaaccttt-accaatggcaatgaatccgaccaccaaca 199  Q
     ||| | |||||||| ||||||||| ||||| ||||||| || ||||| ||| |  ||||| |||||||| ||||||||||||||||  |||| |||||     
T  11121377 -agcaaattctggcccacaacaagccatcatgcaagcacaacttaggcacaattatgaactccaaccttttaccaatggcaatgaatttgaccgccaacg 11121279  T
Q  200 tggtatcgaatctacccaccaaccactaactgagacacaagacaacaagtttgtacgataatttctagcatatcaatcaaaatcctccctcaaatagaac 299  Q
     |||| |||||  |||| | ||||||| | ||||||||||||||||||||||||| ||   |||||||| ||||||||  ||| ||   |||||| || |    
T  11121278 cggtagcgaatacacccgcgaaccactcattgagacacaagacaacaagtttgtatgaccgtttctagcctatcaatctgaatactttgtcaaatggagc 11121179  T
Q  300 tgccattcgacataactcacacgctcagaacacgaaagtgaagatctgagtcgagtcacaccaacccgtgcgggttttgccccaaaatgcgagaaccaac 399  Q
    ||||||  |||| ||| |||||||| ||||| |||||||| |||||||| | || | |||||||||||||  ||||||  ||||||  ||||||||||||    
T  11121178 tgccatctgacagaacccacacgcttagaactcgaaagtgcagatctgatttgaataacaccaacccgtg-tggttttttcccaaagcgcgagaaccaac 11121080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 1122291 - 1122232
Alignment:
Q  22 attcttgaaagtggggagtggattcgaacgccaacatggtaa-taacgaatccacgcgca 80  Q
    |||||||| |||||||||||||||||| |||||||| ||||| || ||||||||| ||||    
T  1122291 attcttgagagtggggagtggattcgaccgccaacacggtaattagcgaatccacacgca 1122232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 526
Target Start/End: Complemental strand, 20125273 - 20125155
Alignment:
Q  408 agaagatccttcaaaaagaaaccacaactgacaaagatatgccaaacaaaaacatatcatagttgtatcaaaaacaaacacagaaccggccaccacacgt 507  Q
    |||| |||| |||||||||| ||||||| | ||||||||||| | ||||| ||||||||  |||| | ||| ||||||||| ||||| | |||||||||     
T  20125273 agaaaatccgtcaaaaagaacccacaaccgccaaagatatgcaagacaaagacatatcactgttgaaacaagaacaaacacggaaccagtcaccacacgc 20125174  T
Q  508 cgccgtcgtgtttgtgtgt 526  Q
    |||||||| ||||||||||    
T  20125173 cgccgtcgggtttgtgtgt 20125155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 7647656 - 7647600
Alignment:
Q  20 aaattcttgaaagtggggagtggattcgaacgccaacatggta-ataacgaatccac 75  Q
    |||||||||| ||||||||||| |||||| |||||||| ||||  ||||||||||||    
T  7647656 aaattcttgagagtggggagtgcattcgaccgccaacacggtagttaacgaatccac 7647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 32829303 - 32829235
Alignment:
Q  13 cacagacaaattcttgaaagtggggagtggattcgaacgccaacatggtaa-taacgaatccacgcgcac 81  Q
    ||||||||||| ||||||| ||||| |||||||||| |||||||| ||||| |||||||| |||||||||    
T  32829303 cacagacaaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcac 32829235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 5965188 - 5965120
Alignment:
Q  13 cacagacaaattcttgaaagtggggagtggattcgaacgccaacatggtaa-taacgaatccacgcgcac 81  Q
    ||||||||||| ||||||| ||||| ||| |||||| |||||||| ||||| |||||||| |||||||||    
T  5965188 cacagacaaatgcttgaaaatgggg-gtgaattcgaccgccaacacggtaattaacgaattcacgcgcac 5965120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 641074 - 641018
Alignment:
Q  20 aaattcttgaaagtggggagtggattcgaacgccaacatggta-ataacgaatccac 75  Q
    |||||||||| |||||||||||||||||| |||||||| ||||  ||||||||||||    
T  641074 aaattcttgagagtggggagtggattcgaccgccaacacggtagttaacgaatccac 641018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 16044535 - 16044475
Alignment:
Q  22 attcttgaaagtggggagtggattcgaacgccaacatggtaa-taacgaatccacgcgcac 81  Q
    |||||||| ||||||||  |||||||| |||||||||||||| || ||||||||| |||||    
T  16044535 attcttgagagtggggaaaggattcgaccgccaacatggtaattagcgaatccacccgcac 16044475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 4545784 - 4545738
Alignment:
Q  17 gacaaattcttgaaagtggggagtggattcgaacgccaacatggtaa 63  Q
    |||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  4545784 gacatattcttgagagtggggattggattcgaccgccaacatggtaa 4545738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 1576131 - 1576083
Alignment:
Q  96 ttaatcagctatttctggccgacaacaagcgatcatacaagcactacct 144  Q
    ||||||| | |||||||||| |||||||| |||||||||||||| ||||    
T  1576131 ttaatcaaccatttctggcccacaacaagtgatcatacaagcacaacct 1576083  T

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