View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19210_low_7 (Length: 534)

Name: NF19210_low_7
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19210_low_7
NF19210_low_7
[»] scaffold0025 (1 HSPs)
scaffold0025 (200-524)||(36741-37058)
[»] chr5 (3 HSPs)
chr5 (259-524)||(408129-408390)
chr5 (259-394)||(41485110-41485245)
chr5 (480-522)||(41485002-41485044)
[»] chr6 (7 HSPs)
chr6 (338-515)||(16358729-16358903)
chr6 (338-515)||(18849535-18849710)
chr6 (272-402)||(26141589-26141724)
chr6 (259-402)||(26045889-26046037)
chr6 (272-394)||(25509503-25509630)
chr6 (425-461)||(26045831-26045867)
chr6 (425-461)||(26141531-26141567)
[»] chr2 (5 HSPs)
chr2 (269-396)||(13693784-13693911)
chr2 (259-383)||(45224858-45224985)
chr2 (340-402)||(41454865-41454927)
chr2 (428-525)||(45225018-45225116)
chr2 (81-112)||(37841531-37841562)
[»] chr8 (3 HSPs)
chr8 (259-402)||(9035131-9035273)
chr8 (338-515)||(3372082-3372257)
chr8 (427-524)||(9035591-9035688)
[»] scaffold0215 (1 HSPs)
scaffold0215 (338-523)||(24728-24911)
[»] chr4 (5 HSPs)
chr4 (259-394)||(44037141-44037276)
chr4 (259-524)||(16422299-16422571)
chr4 (258-499)||(6019254-6019493)
chr4 (429-524)||(44203567-44203665)
chr4 (340-405)||(41389217-41389282)
[»] chr7 (7 HSPs)
chr7 (259-411)||(33164328-33164480)
chr7 (101-170)||(5519222-5519291)
chr7 (259-383)||(478026-478150)
chr7 (263-318)||(47293788-47293843)
chr7 (353-402)||(28195303-28195352)
chr7 (462-522)||(47293316-47293377)
chr7 (448-524)||(28195395-28195471)
[»] chr1 (2 HSPs)
chr1 (263-492)||(35812105-35812333)
chr1 (424-514)||(12698965-12699055)
[»] chr3 (6 HSPs)
chr3 (319-388)||(26641423-26641492)
chr3 (308-524)||(4477362-4477578)
chr3 (242-318)||(28080357-28080433)
chr3 (425-512)||(28145018-28145105)
chr3 (431-524)||(26641516-26641610)
chr3 (351-396)||(41378901-41378946)


Alignment Details
Target: scaffold0025 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 200 - 524
Target Start/End: Original strand, 36741 - 37058
Alignment:
Q  200 gggtactagtaaaacggtgaagtacttgtaccaggtacgcatccgtatcgggtacacgtgtggtacttcatttttgctcgttattgtattgtgaatgaaa 299  Q
    ||||||| ||||||||||||||||| |||||| ||||| || ||||||  ||||| ||||  ||||| || ||||||||  ||||||||||||| || ||    
T  36741 gggtacttgtaaaacggtgaagtacctgtaccgggtactcacccgtat--ggtactcgtg--gtactccagttttgctcaatattgtattgtgagtggaa 36836  T
Q  300 tttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaa 399  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||  ||||||| ||    
T  36837 tttgtggctttctcctatacattaatatgataatataatgttatttgtgcgtttgagtttctttgttgttgtaacca--tctaaatttcaactttttaaa 36934  T
Q  400 cttttaaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtacctt 499  Q
    || |||| ||||         ||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||| || |||||||||    
T  36935 ctattaatgtga--ttattttgttgtgaattgaagaatttaactctttcatgttatattctataacaaaacttatgattttattgacgtatccgtacctt 37032  T
Q  500 a-ctttttctaaaattgccatattct 524  Q
    |  |||||||||||||||| ||||||    
T  37033 atttttttctaaaattgccgtattct 37058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 259 - 524
Target Start/End: Original strand, 408129 - 408390
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||  | |||||| | |||||||| ||||||||||    
T  408129 gtggtactccatttttgctcattattgtattgtgagtgaaatttgtggctttctcttatacattaata--acaatatactattatttgtgcgtttgagtt 408226  T
Q  359 tctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgttatagt 458  Q
    ||||||||||||||| | ||||||||||| |||||||| ||||| | | ||||         ||||| |||||||||||||||  ||| ||||||||| |    
T  408227 tctttgttgttgtaaccgactctaaatttggactttttaaacttctgatgtga--tttttttgttgtgaattgaagaatttaattctttcatgttatatt 408324  T
Q  459 ctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattgccatattct 524  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  408325 ctataacaaaacttatgattttattgacgtacccgtaccttactttttctaaaattgccgtattct 408390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 394
Target Start/End: Complemental strand, 41485245 - 41485110
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    |||| |||||| |||| ||| |||||||| | |||||||||| ||||||  |||||| || |||||||||| ||| |||| |||||||| || |||||||    
T  41485245 gtggcacttcaattttcctcattattgtactctgaatgaaatctatggcactctcctttatattaatatgacaatttaatattatttgtgcgcttgagtt 41485146  T
Q  359 tctttgttgttgtaatcaactctaaattttgacttt 394  Q
    |||||||| |||||| ||||| ||||||||||||||    
T  41485145 tctttgttattgtaaccaactttaaattttgacttt 41485110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 522
Target Start/End: Complemental strand, 41485044 - 41485002
Alignment:
Q  480 tattgacatacccgtaccttactttttctaaaattgccatatt 522  Q
    ||||||| ||||||||||||||||||| |||||||||| ||||    
T  41485044 tattgacgtacccgtaccttactttttttaaaattgccgtatt 41485002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 338 - 515
Target Start/End: Complemental strand, 16358903 - 16358729
Alignment:
Q  338 tgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaat 437  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| ||||          || | |||||||||||    
T  16358903 tgttatttgtgcgtttgagtttctttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtgattttctt---ttatgaattgaagaat 16358807  T
Q  438 ttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattg 515  Q
    ||||| | | ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  16358806 ttaactccttcatgttatattctataacaaaacttatgattttattgacgtacccgtaccttactttttctaaaattg 16358729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 515
Target Start/End: Original strand, 18849535 - 18849710
Alignment:
Q  338 tgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaat 437  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||||||| || ||||| ||||| ||| ||||         ||| | |||||||||||    
T  18849535 tgttatttgtgcatttgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttctt--gttatgaattgaagaat 18849632  T
Q  438 ttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattg 515  Q
    ||||| | | ||||||||| ||||| ||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  18849633 ttaactccttcatgttatattctatgacaaaacttatgattttattgacgtactcgtcccttactttttctaaaattg 18849710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 402
Target Start/End: Complemental strand, 26141724 - 26141589
Alignment:
Q  272 tttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtttctttgttgttgt 371  Q
    ||||||| ||| |||||||||| |||||||||||| |||||| | ||||||||||||| | |||||| |||||||| | ||||||||||||||||| | |    
T  26141724 tttgctcattaatgtattgtgagtgaaatttatggatttctcttgtacattaatatgacactataatattatttgtgcatttgagtttctttgttgcttt 26141625  T
Q  372 aat-----caactctaaattttgactttttcaactt 402  Q
    |||     |||||||||||||||||||||| |||||    
T  26141624 aatataaccaactctaaattttgactttttaaactt 26141589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 259 - 402
Target Start/End: Complemental strand, 26046037 - 26045889
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    |||||||| | | ||||| | ||| |||||||||| |||||||||||| |||||| | ||||||||||||| | |||||| |||||||| | ||||| ||    
T  26046037 gtggtactccgtctttgcacattaatgtattgtgagtgaaatttatggatttctcttgtacattaatatgacactataatattatttgtgcatttgaatt 26045938  T
Q  359 tctttgttgttgtaat-----caactctaaattttgactttttcaactt 402  Q
    ||||||||| | ||||     |||||||||||||||||||||| |||||    
T  26045937 tctttgttgctttaatataaccaactctaaattttgactttttaaactt 26045889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 394
Target Start/End: Complemental strand, 25509630 - 25509503
Alignment:
Q  272 tttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtttctttgttgttg- 370  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| | |||| |||||||| | | |||| |||||||| | ||||||||||||||||| ||     
T  25509630 tttgctcattaatgtattgtgaatgaaatttatggatttctcttgtacactaatatgacactgtaatattatttgtgcatttgagtttctttgttgctgt 25509531  T
Q  371 ----taatcaactctaaattttgacttt 394  Q
        ||| ||||||||||||||||||||    
T  25509530 gatataaccaactctaaattttgacttt 25509503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 26045867 - 26045831
Alignment:
Q  425 taaattgaagaatttaacccttccatgttatagtcta 461  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  26045867 taaattgaagaatttaactcttccatgttatattcta 26045831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 26141567 - 26141531
Alignment:
Q  425 taaattgaagaatttaacccttccatgttatagtcta 461  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  26141567 taaattgaagaatttaactcttccatgttatattcta 26141531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 269 - 396
Target Start/End: Complemental strand, 13693911 - 13693784
Alignment:
Q  269 atttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtttctttgttgt 368  Q
    ||||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||  |||||| |||||||||||||    
T  13693911 atttttgttcattatattattgtgagtgaaatttatggctttctcctatacattaataggacaatataatgttatttgcgcgtttgcgtttctttgttgt 13693812  T
Q  369 tgtaatcaactctaaattttgacttttt 396  Q
    ||||| ||||||||||||||||||||||    
T  13693811 tgtaaccaactctaaattttgacttttt 13693784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 45224858 - 45224985
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacat---taatatgataatataatgttatttgtccgtttga 355  Q
    |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||| |||| ||   ||||||||||||||| | || |||||   |||||    
T  45224858 gtggtactccatttttgctcattattgtattgtgagtgaaatttgtggctttctcttatatattaataatatgataatatagtattgtttgtgaatttga 45224957  T
Q  356 gtttctttgttgttgtaatcaactctaa 383  Q
    |||||||||| | ||||| |||||||||    
T  45224958 gtttctttgtagctgtaaccaactctaa 45224985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 41454865 - 41454927
Alignment:
Q  340 ttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaactt 402  Q
    |||||||| | |||||||||||||||| |||||| ||||||||||||| |||||||| |||||    
T  41454865 ttatttgtgcctttgagtttctttgttattgtaaccaactctaaatttcgactttttaaactt 41454927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 525
Target Start/End: Original strand, 45225018 - 45225116
Alignment:
Q  428 attgaagaatttaacccttccatgttatagtctataacaaaa-cttatgattctattgacatacccgtaccttactttttctaaaattgccatattctt 525  Q
    ||||||||| ||| | ||| ||||||||| | |||||||||| ||||||||| ||||||| ||||| |||||||||||||  ||||||| | |||||||    
T  45225018 attgaagaacttatctctttcatgttatattatataacaaaaacttatgattttattgacttacccctaccttactttttaaaaaattggcgtattctt 45225116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 112
Target Start/End: Original strand, 37841531 - 37841562
Alignment:
Q  81 ctcttttgtgtatatatgagccatactcaaca 112  Q
    ||||||||||||||||||||||||||||||||    
T  37841531 ctcttttgtgtatatatgagccatactcaaca 37841562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 259 - 402
Target Start/End: Original strand, 9035131 - 9035273
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||| ||| |||||| || |||||||||||| |||||||||||||||||  ||||| |||    
T  9035131 gtggtacttaatttttgctcattattgt-ttgtgaatgaaatttgtggttttctcatacacattaatatgacaatataatgttatttgtatgtttgcgtt 9035229  T
Q  359 tctttgttgttgtaatcaactctaaattttgactttttcaactt 402  Q
    ||||||||||||||| ||||||||||||| ||||| || |||||    
T  9035230 tctttgttgttgtaaccaactctaaatttcgacttcttaaactt 9035273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 515
Target Start/End: Complemental strand, 3372257 - 3372082
Alignment:
Q  338 tgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaat 437  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||| || ||||| ||||| ||| ||||         ||| | |||||||||||    
T  3372257 tgttatttgtgcatttgagtttctttattgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttctt--gttatgaattgaagaat 3372160  T
Q  438 ttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattg 515  Q
    ||||| | | ||||||||| ||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  3372159 ttaactccttcatgttatattctatgacaaaacttatgattttattgacgtacccgtcccttactttttctaaaattg 3372082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 427 - 524
Target Start/End: Original strand, 9035591 - 9035688
Alignment:
Q  427 aattgaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattgccatattct 524  Q
    |||||||||||||||| ||| ||||||||  |||| ||||||| |||||||| ||||||| ||||| ||||||||||||| | |||||| | ||||||    
T  9035591 aattgaagaatttaactctttcatgttattttctaaaacaaaatttatgattttattgacgtacccataccttacttttttttaaattgacgtattct 9035688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 338 - 523
Target Start/End: Complemental strand, 24911 - 24728
Alignment:
Q  338 tgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaat 437  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||| || ||||| ||||| ||| ||||         ||| | |||||||||||    
T  24911 tgttatttgtgcgtgtgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttctt--gttatgaattgaagaat 24814  T
Q  438 ttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattgccatattc 523  Q
    ||||| | | ||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||    
T  24813 ttaactccttcatgttatattctatgacaaaacttatgattttattgacgtacccgtcccttactttttctaaaattgtcatattc 24728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 259 - 394
Target Start/End: Original strand, 44037141 - 44037276
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    |||||||| ||||||||||| |||||||  ||||| |||||||| |||||||||| ||||||| ||||||| |||| ||| ||| ||||  |||||||||    
T  44037141 gtggtactccatttttgctcattattgtgatgtgagtgaaatttttggctttctcttatacatcaatatgacaatacaatattacttgtgtgtttgagtt 44037240  T
Q  359 tctttgttgttgtaatcaactctaaattttgacttt 394  Q
    ||||||||||||||| ||||||||||||| ||||||    
T  44037241 tctttgttgttgtaaccaactctaaatttcgacttt 44037276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 259 - 524
Target Start/End: Complemental strand, 16422571 - 16422299
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatg-----ataatataatgttatttgtccgttt 353  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||| | ||||| |||||| |||||||     |||||||||| ||||||||   |||    
T  16422571 gtggtacttcattttttctcattattgtattgtgagtgaaatttatgacattctcttatacactaatatgacaatataatataatattatttgtgtattt 16422472  T
Q  354 gagtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgtt 453  Q
     ||||| ||||||  ||||| |||||||||||||||||||||| ||||| ||  ||||         | ||  ||| |||||||||||| ||| ||||||    
T  16422471 aagtttatttgttactgtaaccaactctaaattttgactttttaaacttctattgtga--tttttttgctgcgaatcgaagaatttaactctttcatgtt 16422374  T
Q  454 atagtctataacaaaacttatgattctattgacatacccgtacc----ttactttttctaaaattgccatattct 524  Q
    ||| ||||||||||||||| ||||| || | || ||||  ||||    |||||||||||||||||| | ||||||    
T  16422373 atattctataacaaaacttctgattttactaacgtaccgataccttaattactttttctaaaattgtcgtattct 16422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 258 - 499
Target Start/End: Complemental strand, 6019493 - 6019254
Alignment:
Q  258 tgtggtacttcatttttgctcgttattgtattgtgaa-tgaaatttatggctttctcct-atacattaatatgataatataatgttatttgtccgtttga 355  Q
    ||||||||| ||||||| ||| ||||||||||||||| |||||||| ||  ||| | || |||||||||||| | |||||| | |||||| | |||||||    
T  6019493 tgtggtactccattttttctcattattgtattgtgaaatgaaatttgtgatttttttcttatacattaatataacaatatactattatttatgcgtttga 6019394  T
Q  356 gtttctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgttat 455  Q
    ||||||  |||||||||| ||||||||||||| |||||||| || || | | ||||         ||||| |||||||||||||||  ||| |||||| |    
T  6019393 gtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga--tatttttgttgtgaattgaagaatttaaatctttcatgttgt 6019298  T
Q  456 agtctataacaaaacttatgattctattgacatacccgtacctt 499  Q
    | || ||||||||| |||||||| ||||||| |||  |||||||    
T  6019297 attccataacaaaatttatgattttattgacgtacttgtacctt 6019254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 524
Target Start/End: Complemental strand, 44203665 - 44203567
Alignment:
Q  429 ttgaagaatttaacccttccatgttatagt---ctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattgccatattct 524  Q
    |||||||||||| | ||||||||||||| |    ||||||||||||||||||| ||||||| || ||||||||||||||||  ||||||| | ||||||    
T  44203665 ttgaagaatttatctcttccatgttatattatagtataacaaaacttatgattttattgacgtatccgtaccttacttttttaaaaattgtcgtattct 44203567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 405
Target Start/End: Complemental strand, 41389282 - 41389217
Alignment:
Q  340 ttatttgtccgtttgagtttctttgttgttgtaatcaactctaaattttgactttttcaactttta 405  Q
    |||||| | ||||||||||||||||||||| ||| ||||||| | ||| |||||||| || |||||    
T  41389282 ttatttatgcgtttgagtttctttgttgttataaccaactcttagtttcgactttttaaattttta 41389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 259 - 411
Target Start/End: Complemental strand, 33164480 - 33164328
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    |||||||| |||||||||||  ||||||| ||||| |||||||| |||||||||| ||||||| ||||||| || | ||| ||| ||||  |||||||||    
T  33164480 gtggtactccatttttgctcaatattgtaatgtgagtgaaatttttggctttctcttatacatcaatatgacaaaacaatattacttgtgtgtttgagtt 33164381  T
Q  359 tctttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtga 411  Q
    || |||||||||||| ||||||||||||| |||||||| ||||| ||| ||||    
T  33164380 tcgttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtga 33164328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 5519291 - 5519222
Alignment:
Q  101 ccatactcaacacaaacaatcatattcttctagtatattcttgttttggtaaataacattcttctgtttt 170  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||    
T  5519291 ccatcctcaacacaaacaatcatattcttctagtatattattgttttagtaaataacactcttctatttt 5519222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 478150 - 478026
Alignment:
Q  259 gtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgagtt 358  Q
    ||||||| ||| |||||||| ||||| || ||||||||||| || || ||||||| | || ||||||||||||||||| ||||||  || | | ||||||    
T  478150 gtggtacatcaattttgctcattattctactgtgaatgaaaattgtgactttctcttgtatattaatatgataatatagtgttatgcgtgcatatgagtt 478051  T
Q  359 tctttgttgttgtaatcaactctaa 383  Q
    | |||| |||||||| |||| ||||    
T  478050 tttttgctgttgtaaccaacactaa 478026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 47293843 - 47293788
Alignment:
Q  263 tacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctata 318  Q
    |||| |||||||||||  ||||||||||||| |||||||| |||||||||| ||||    
T  47293843 tactgcatttttgctcagtattgtattgtgagtgaaatttgtggctttctcttata 47293788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 28195303 - 28195352
Alignment:
Q  353 tgagtttctttgttgttgtaatcaactctaaattttgactttttcaactt 402  Q
    ||||||| ||||||||||||| ||||||||| ||| |||||||| |||||    
T  28195303 tgagtttttttgttgttgtaaccaactctaattttcgactttttaaactt 28195352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 522
Target Start/End: Complemental strand, 47293377 - 47293316
Alignment:
Q  462 taacaaaacttatgattctattgacatacccgtaccttactttttct-aaaattgccatatt 522  Q
    |||||||||||||| || ||||||| |||   ||||||||||||||| ||||||||||||||    
T  47293377 taacaaaacttatggttttattgacgtacatataccttactttttctaaaaattgccatatt 47293316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 28195395 - 28195471
Alignment:
Q  448 catgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaattgccatattct 524  Q
    ||||||||| | |||||||||||| |||||| | |||||  ||| |||||||| ||||| ||||||| || ||||||    
T  28195395 catgttatattatataacaaaactcatgattttcttgacgcacctgtaccttaatttttttaaaattaccgtattct 28195471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 263 - 492
Target Start/End: Complemental strand, 35812333 - 35812105
Alignment:
Q  263 tacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctatacattaatatgataatataatgttatttgtccgtttgag-tttct 361  Q
    |||| ||||||||||| ||||| |||||||| | ||| || ||||| |||| |||| |||||||||| |||||| |||| | ||| | |||||| ||| |    
T  35812333 tactccatttttgctcattattctattgtgagtaaaaattgtggctctctcttatagattaatatgacaatatagtgttgtatgtgcatttgagttttat 35812234  T
Q  362 ttgttgttgtaatcaactctaaattttgactttttcaacttttaaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgttatagtcta 461  Q
    |||||||||||| ||||||||  ||| |||||||| ||||||||  || |         |||||||||||||||||| | | ||  ||||||||| | ||    
T  35812233 ttgttgttgtaaccaactctagttttcgactttttaaacttttatcgtaa--tatttttgttgtaaattgaagaattcagctctctcatgttatattata 35812136  T
Q  462 taacaaaacttatgattctattgacataccc 492  Q
    |||||||||| |||||| ||||||| |||||    
T  35812135 taacaaaactcatgattttattgacgtaccc 35812105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 514
Target Start/End: Original strand, 12698965 - 12699055
Alignment:
Q  424 gtaaattgaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaatt 514  Q
    ||||||||||||| ||| | ||  ||||||||| | ||||||||||||| ||||| |||||| |||  || |||||| ||||| |||||||    
T  12698965 gtaaattgaagaacttagctctctcatgttatattatataacaaaacttttgattttattgatatattcggaccttagtttttttaaaatt 12699055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 26641423 - 26641492
Alignment:
Q  319 cattaatatgataatataatgttatttgtccgtttgagtttctttgttgttgtaatcaactctaaatttt 388  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  26641423 cattaatatggcaatataatgttatttgtgcgtttgagtttttttgttgttgtaaccaactctaaatttt 26641492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 524
Target Start/End: Complemental strand, 4477578 - 4477362
Alignment:
Q  308 tttctcctatacattaatatgataatataatgttatttgtccgtttgagtttctttgttgttg---taatcaactctaaattttgactttttcaactttt 404  Q
    |||||| ||||||| ||||| | |||||||| ||||||||  |||||||||| ||||||||||   ||  ||||||||  |||  ||||||| ||||| |    
T  4477578 tttctcttatacatcaatataacaatataatattatttgtatgtttgagtttttttgttgttgttttagccaactctatgtttcaactttttaaacttct 4477479  T
Q  405 aaggtgannnnnnnnngttgtaaattgaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttacttt 504  Q
    || ||||          |||| ||| ||||||||||||  || ||||||||| ||||||||||||||||| ||| ||||||| |||  ||||||||||||    
T  4477478 aatgtgatttttta---ttgtgaatcgaagaatttaactttttcatgttatattctataacaaaacttataattttattgacgtacatgtaccttacttt 4477382  T
Q  505 ttctaaaattgccatattct 524  Q
    || |||||||| | ||||||    
T  4477381 ttttaaaattgtcgtattct 4477362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 28080357 - 28080433
Alignment:
Q  242 ccgtatcgggtacacgtgtggtacttcatttttgctcgttattgtattgtgaatgaaatttatggctttctcctata 318  Q
    ||||||||||||| |||| ||||||||||||||| || ||||| |||||||| ||||| || || ||||||| ||||    
T  28080357 ccgtatcgggtacgcgtgcggtacttcatttttgttcattattctattgtgagtgaaaattgtgactttctcttata 28080433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 512
Target Start/End: Original strand, 28145018 - 28145105
Alignment:
Q  425 taaattgaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttactttttctaaaa 512  Q
    |||||||||||||||| ||||  ||||||||| | |||| ||||||| |||||| ||||||| ||||||| | ||| ||||| |||||    
T  28145018 taaattgaagaatttagccctctcatgttatattatatagcaaaactcatgattttattgacgtacccgttctttagtttttttaaaa 28145105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 524
Target Start/End: Original strand, 26641516 - 26641610
Alignment:
Q  431 gaagaatttaacccttccatgttatagtctataacaaaacttatgattctattgacatacccgtaccttac-tttttctaaaattgccatattct 524  Q
    ||||||||||||  || | | ||||| ||| ||||||||||||||||| |||| |  ||||| |||||||| ||||||||||||||  |||||||    
T  26641516 gaagaatttaactatttcgtattatattctgtaacaaaacttatgattttattaatgtacccataccttacttttttctaaaattgttatattct 26641610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Complemental strand, 41378946 - 41378901
Alignment:
Q  351 tttgagtttctttgttgttgtaatcaactctaaattttgacttttt 396  Q
    |||||||||||||||||||||||||||| |||  |||| |||||||    
T  41378946 tttgagtttctttgttgttgtaatcaaccctacttttttacttttt 41378901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University