View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_8 (Length: 531)
Name: NF19210_low_8
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 2007405 - 2006893
Alignment:
| Q |
1 |
cctcttgattatatctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgagagttataacattcaccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2007405 |
cctcttgattatatctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgagagttataacattcaccc |
2007306 |
T |
|
| Q |
101 |
tatttctttctacaaataatacattataccaagcatgcttataatacgttatatttgacagttgagtagaattggtgtataatatctgcatattttattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2007305 |
tatttctttctacaaataatacattataccaagcatgcttataatacgttatatttgacagttgagtagaattggtgtataatatctgcatactttattg |
2007206 |
T |
|
| Q |
201 |
gtttttcataccaacttagtaatttccatttactaaattattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaaggatat |
300 |
Q |
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| T |
2007205 |
gtttttcataccaacttagtaatttccatttactaaattattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaaggatat |
2007106 |
T |
|
| Q |
301 |
ctttatttagatgaacaatcaatggttattgctctaaaatagtcataaacttgtgtttataaattttatagctttcctcttcctaattgtaaatttgtat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2007105 |
ctttatttagatgaacaatcaatggttattgctctaaaatagtcataaacttgtgtttataaattttatagcattcctcttcctaattgtaaatttgtat |
2007006 |
T |
|
| Q |
401 |
ttttagcaaactatagttggcaagtcagaaatgttggatgaagattcctacaaatcagatttactgaagtcataaattaatggagcttctttcccaagca |
500 |
Q |
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| T |
2007005 |
ttttagcaaactatagttggcaagtcagaaatgttggatgaagattcctacaaatcagatttactgaagtcataaattaatggagcttctttcccaagca |
2006906 |
T |
|
| Q |
501 |
gggaaaggccaag |
513 |
Q |
| |
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||||||||||||| |
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| T |
2006905 |
gggaaaggccaag |
2006893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 153 - 356
Target Start/End: Original strand, 1945496 - 1945696
Alignment:
| Q |
153 |
atttgacagttgagtagaattggtgtataatatctgcatattttattggtttttcataccaacttagtaatttccatttactaaattattgtaattttgt |
252 |
Q |
| |
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|||| |||||||||||||||||||||||||||| || || |||||||| ||||||||| ||||| || |||| |||||| | ||||||||||||||| |
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| T |
1945496 |
atttaacagttgagtagaattggtgtataatatgtgattactttattgggttttcatactaacttggtgattttcatttaat---ttattgtaattttgt |
1945592 |
T |
|
| Q |
253 |
gtattttctgttgtgaactattttttcactattgattcctaaggatatctttatttagatgaacaatcaatggttattgctctaaaatagtcataaactt |
352 |
Q |
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||||||| |||||||||||||||| | ||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1945593 |
gtattttttgttgtgaactattttgttgatattgctgcctaaggatatctttataaagatgtacaatcaatggttattgctctaaaatagtcataaactt |
1945692 |
T |
|
| Q |
353 |
gtgt |
356 |
Q |
| |
|
|||| |
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|
| T |
1945693 |
gtgt |
1945696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 238 - 405
Target Start/End: Original strand, 1965900 - 1966067
Alignment:
| Q |
238 |
ttattgtaattttgtgtattttctgttgtgaactattttttcactattgattcctaaggatatctttatttagatgaacaatcaatggttattgctctaa |
337 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1965900 |
ttattgtcattttgtgtatattctgttgtgaactattttgtcagtattgatgcctaaggatatctttatttagttgaacaatcaatggttattgctctaa |
1965999 |
T |
|
| Q |
338 |
aatagtcataaacttgtgtttataaattttatagctttcctcttcctaattgtaaatttgtattttta |
405 |
Q |
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||||||||||||||||| ||| | | ||||| || ||||||||||| ||||||||||| | |||||| |
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| T |
1966000 |
aatagtcataaacttgtattttttatatttatggcattcctcttcctgattgtaaatttatcttttta |
1966067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 461
Target Start/End: Original strand, 1945777 - 1945833
Alignment:
| Q |
404 |
tagcaaactatagttggcaagtcagaaatgttggatgaagattcctacaaatcagatt |
461 |
Q |
| |
|
|||||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1945777 |
tagcaaactacagttgacaattca-aaatgttggatgaagattcctacaaatcagatt |
1945833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 35716380 - 35716310
Alignment:
| Q |
14 |
tctcctaagaacttgataatacacatatcaagatagtcaaggcaagttatagcaataatcgcagaatgaga |
84 |
Q |
| |
|
|||||||||||| || ||||||| |||||| ||||| || | ||||||||||||||||| |||||| |||| |
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| T |
35716380 |
tctcctaagaacctgctaatacatatatcatgatagacatgacaagttatagcaataatagcagaacgaga |
35716310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 2010841 - 2010796
Alignment:
| Q |
153 |
atttgacagttgagtagaattggtgtataatatctgcatattttatt |
199 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
2010841 |
atttgacagttgagtagaattggtgt-taatatctgcttactttatt |
2010796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 5890212 - 5890162
Alignment:
| Q |
2 |
ctcttgattatatctcctaagaacttgataatacacatatcaagatagtca |
52 |
Q |
| |
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|||||||||||||| | |||||||||| ||||| ||||||||||||||||| |
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| T |
5890212 |
ctcttgattatatcccttaagaacttgctaatatacatatcaagatagtca |
5890162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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