View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19210_low_9 (Length: 460)
Name: NF19210_low_9
Description: NF19210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19210_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 4050377 - 4050810
Alignment:
| Q |
18 |
aatgttatcaaatagtggcggccatatatagcagcagcatagcactacagactatagcgtagcggaatttgnnnnnnntcgttattgttccaccatatgc |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
4050377 |
aatgttattaaatagtggcggccatatatagcagcagcatagcactatagactatagcgtagcggaatttgaaaaaaatcgttattgtttcaccatatgc |
4050476 |
T |
|
| Q |
118 |
tatttaatccaaaatattgtcaaatagcaggtatatggcactatatcactgttttgtaacagaatttgaacaaaccactatttttggcaatccgcggtta |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4050477 |
tatttagtccaaaatattgtcaaatagcaggtatatggcgctatatcactgttgtgtaacagaatttgaacaaaccactatttttggcaatccgcggtta |
4050576 |
T |
|
| Q |
218 |
acaacactgattgatcacgatccagaaatttgaaatgcagctattgaaaaagaactattagaagatgatggaacaaacaaaatgctatagaagttagtct |
317 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4050577 |
acaacactgagatatcacgatccagaaatttgaaatgcagctattgaaaaagaactattagaagatgatggaacaaacaaaatgctatagaag-tagtct |
4050675 |
T |
|
| Q |
318 |
tcattgttttattagtaaaagttagttcctaccatatacctatgatgaatacctaagactttggtaaattcatccgtttcatttgcannnnnnnatcata |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4050676 |
tcattgttttattagtaaaagttagttcctaccatatacctatgatgaatacctaagactttggtaaattcatccgtttcatttgcatttgtttatcata |
4050775 |
T |
|
| Q |
418 |
tttgtaatttctttctaacacaatcacagtataat |
452 |
Q |
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| T |
4050776 |
tttgtaatttctttctaacacaatcacagtataat |
4050810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 19390957 - 19391030
Alignment:
| Q |
97 |
cgttattgttccaccatatgctatttaatccaaaatattgtcaaatagcaggtata-tggcactatatcactgt |
169 |
Q |
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|||| ||||||||| ||| |||||||| | |||| |||||||||||||||| |||| |||| ||||| |||||| |
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| T |
19390957 |
cgttgttgttccacaataagctatttagtacaaagtattgtcaaatagcagttatagtggcgctatagcactgt |
19391030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 33532535 - 33532434
Alignment:
| Q |
101 |
attgttccaccatatgctatttaatccaaaatattgtcaaatagcaggtata-tggcactatatcactgttttgtaacagaatttgaacaaaccactatt |
199 |
Q |
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| T |
33532535 |
attgttacactatacgctatttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctatt |
33532436 |
T |
|
| Q |
200 |
tt |
201 |
Q |
| |
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|| |
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| T |
33532435 |
tt |
33532434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 16495118 - 16495147
Alignment:
| Q |
172 |
tgtaacagaatttgaacaaaccactatttt |
201 |
Q |
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| T |
16495118 |
tgtaacagaatttgaacaaaccactatttt |
16495147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 36323199 - 36323248
Alignment:
| Q |
177 |
cagaatttgaacaaaccactatttttggcaatccgcggttaacaacactg |
226 |
Q |
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|||||||||||||||||||||||||| || ||| ||| || ||||||||| |
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| T |
36323199 |
cagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg |
36323248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 24673442 - 24673342
Alignment:
| Q |
127 |
caaaatattgtcaaatagcaggtatat-ggcactatatcactgttttgtaacagaatttgaacaaaccactatttttggcaatccgcggttaacaacact |
225 |
Q |
| |
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|||||| |||||||||||| | |||| ||||| ||||||||||| || | ||||||||||||||||||||||| | |||||| ||||||||||| |
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| T |
24673442 |
caaaatgttgtcaaatagccgctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttctgtgatccgcaattaacaacact |
24673343 |
T |
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| Q |
226 |
g |
226 |
Q |
| |
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| T |
24673342 |
g |
24673342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 33751209 - 33751173
Alignment:
| Q |
173 |
gtaacagaatttgaacaaaccactatttttggcaatc |
209 |
Q |
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||||||||||||||||||||| |||||||| |||||| |
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| T |
33751209 |
gtaacagaatttgaacaaaccgctattttttgcaatc |
33751173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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