View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19211_high_2 (Length: 418)

Name: NF19211_high_2
Description: NF19211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19211_high_2
NF19211_high_2
[»] chr7 (22 HSPs)
chr7 (143-408)||(21613032-21613295)
chr7 (231-404)||(48219530-48219703)
chr7 (293-404)||(20377810-20377921)
chr7 (231-404)||(26500961-26501133)
chr7 (231-404)||(26591580-26591752)
chr7 (90-225)||(39476482-39476618)
chr7 (104-225)||(41219372-41219493)
chr7 (112-210)||(37524169-37524267)
chr7 (104-224)||(8260848-8260969)
chr7 (104-209)||(27874038-27874143)
chr7 (19-97)||(21612957-21613036)
chr7 (135-225)||(21153754-21153844)
chr7 (284-380)||(2913148-2913244)
chr7 (104-228)||(18239401-18239525)
chr7 (284-391)||(8725791-8725898)
chr7 (119-182)||(34354429-34354492)
chr7 (104-186)||(29714268-29714349)
chr7 (98-151)||(3742437-3742490)
chr7 (118-210)||(37449985-37450078)
chr7 (329-380)||(18239269-18239320)
chr7 (101-160)||(39283955-39284014)
chr7 (143-183)||(35126275-35126315)
[»] chr3 (23 HSPs)
chr3 (104-404)||(6755533-6755833)
chr3 (20-378)||(14995068-14995430)
chr3 (104-408)||(6462964-6463269)
chr3 (293-404)||(53825747-53825858)
chr3 (81-318)||(7956166-7956403)
chr3 (293-398)||(42948915-42949020)
chr3 (293-373)||(2324057-2324137)
chr3 (104-225)||(39415314-39415435)
chr3 (208-365)||(42384420-42384576)
chr3 (310-380)||(7955515-7955585)
chr3 (77-225)||(25574767-25574916)
chr3 (104-225)||(48086811-48086932)
chr3 (284-408)||(25886181-25886306)
chr3 (275-379)||(25744971-25745076)
chr3 (115-160)||(37282182-37282227)
chr3 (77-160)||(23029588-23029672)
chr3 (294-380)||(48087001-48087087)
chr3 (88-160)||(49742161-49742234)
chr3 (292-380)||(39415502-39415590)
chr3 (104-155)||(2182556-2182607)
chr3 (329-380)||(25575020-25575071)
chr3 (143-184)||(50561451-50561492)
chr3 (336-380)||(32211322-32211366)
[»] chr4 (32 HSPs)
chr4 (24-391)||(24607985-24608354)
chr4 (135-375)||(40962538-40962781)
chr4 (231-404)||(46815193-46815367)
chr4 (231-399)||(33163083-33163251)
chr4 (104-224)||(49065549-49065669)
chr4 (293-398)||(53267272-53267377)
chr4 (77-225)||(21713162-21713311)
chr4 (278-380)||(13867647-13867749)
chr4 (231-363)||(28797930-28798063)
chr4 (332-404)||(36173103-36173175)
chr4 (104-226)||(27761126-27761248)
chr4 (147-236)||(42039026-42039115)
chr4 (284-404)||(49261600-49261720)
chr4 (284-408)||(372822-372947)
chr4 (105-224)||(9242917-9243036)
chr4 (284-380)||(40221095-40221191)
chr4 (278-380)||(13855925-13856027)
chr4 (107-225)||(38131410-38131528)
chr4 (107-228)||(31936317-31936437)
chr4 (101-185)||(2777940-2778024)
chr4 (143-225)||(372703-372785)
chr4 (106-181)||(14289680-14289755)
chr4 (284-378)||(18414019-18414113)
chr4 (143-225)||(32935692-32935774)
chr4 (359-408)||(17212570-17212619)
chr4 (143-225)||(16525077-16525160)
chr4 (136-186)||(49261821-49261871)
chr4 (106-155)||(31823010-31823059)
chr4 (166-225)||(31823039-31823098)
chr4 (294-380)||(31936165-31936251)
chr4 (136-225)||(13856059-13856148)
chr4 (331-376)||(14990155-14990200)
[»] chr1 (28 HSPs)
chr1 (25-378)||(47983569-47983915)
chr1 (107-376)||(18843823-18844093)
chr1 (121-404)||(5766640-5766924)
chr1 (231-404)||(45690425-45690599)
chr1 (278-408)||(27034189-27034320)
chr1 (293-400)||(50066978-50067084)
chr1 (284-408)||(5767416-5767540)
chr1 (102-224)||(3660175-3660297)
chr1 (302-399)||(47486783-47486880)
chr1 (88-225)||(39222654-39222792)
chr1 (77-213)||(46923718-46923855)
chr1 (104-225)||(48566726-48566847)
chr1 (284-396)||(23602780-23602892)
chr1 (107-225)||(41871704-41871822)
chr1 (104-185)||(5770599-5770680)
chr1 (101-213)||(21482871-21482983)
chr1 (326-387)||(6086477-6086538)
chr1 (101-179)||(10308439-10308517)
chr1 (136-213)||(49597193-49597270)
chr1 (166-225)||(46178671-46178730)
chr1 (101-179)||(33686586-33686665)
chr1 (329-379)||(3782094-3782144)
chr1 (101-223)||(1671324-1671447)
chr1 (138-225)||(9343499-9343586)
chr1 (104-186)||(23602993-23603076)
chr1 (329-380)||(49597385-49597436)
chr1 (329-375)||(41871926-41871972)
chr1 (284-380)||(9343625-9343721)
[»] chr2 (14 HSPs)
chr2 (231-380)||(16710088-16710236)
chr2 (231-404)||(22494635-22494808)
chr2 (104-225)||(29908471-29908592)
chr2 (90-213)||(12874196-12874320)
chr2 (78-225)||(29132632-29132780)
chr2 (46-182)||(16710243-16710381)
chr2 (104-213)||(6903725-6903833)
chr2 (88-213)||(8556189-8556315)
chr2 (134-203)||(28266005-28266074)
chr2 (329-375)||(20149444-20149490)
chr2 (166-248)||(20149569-20149651)
chr2 (329-380)||(25685895-25685946)
chr2 (102-160)||(32737934-32737992)
chr2 (166-206)||(25686069-25686109)
[»] chr8 (9 HSPs)
chr8 (260-404)||(43636462-43636606)
chr8 (284-396)||(1931498-1931610)
chr8 (101-225)||(43693562-43693686)
chr8 (315-392)||(33775408-33775485)
chr8 (104-225)||(34471590-34471710)
chr8 (104-213)||(23542752-23542861)
chr8 (284-404)||(43835142-43835262)
chr8 (329-380)||(3964187-3964238)
chr8 (135-225)||(3964009-3964098)
[»] scaffold1700 (1 HSPs)
scaffold1700 (278-408)||(940-1071)
[»] chr6 (10 HSPs)
chr6 (231-387)||(35054679-35054835)
chr6 (106-247)||(23912225-23912366)
chr6 (278-353)||(9400164-9400239)
chr6 (111-225)||(319200-319314)
chr6 (104-213)||(13312555-13312664)
chr6 (143-185)||(17399041-17399083)
chr6 (125-186)||(9521402-9521463)
chr6 (329-380)||(23912082-23912133)
chr6 (169-213)||(2419805-2419849)
chr6 (134-226)||(24173556-24173648)
[»] chr5 (21 HSPs)
chr5 (208-404)||(3460108-3460304)
chr5 (295-404)||(4845478-4845587)
chr5 (88-225)||(6427235-6427373)
chr5 (293-403)||(40014161-40014270)
chr5 (89-210)||(7083984-7084106)
chr5 (137-364)||(2599801-2600028)
chr5 (101-225)||(1172933-1173057)
chr5 (278-408)||(9883720-9883851)
chr5 (333-404)||(19401717-19401788)
chr5 (105-225)||(41758709-41758829)
chr5 (132-225)||(10532789-10532882)
chr5 (104-225)||(28784767-28784888)
chr5 (329-387)||(10399112-10399170)
chr5 (284-380)||(19044036-19044132)
chr5 (105-184)||(11125823-11125901)
chr5 (105-185)||(16100850-16100930)
chr5 (101-210)||(1081899-1082009)
chr5 (104-225)||(20202606-20202726)
chr5 (101-160)||(12144012-12144071)
chr5 (329-380)||(41758554-41758605)
chr5 (136-200)||(19043886-19043950)
[»] scaffold0753 (1 HSPs)
scaffold0753 (124-224)||(3987-4088)
[»] scaffold0861 (1 HSPs)
scaffold0861 (90-225)||(3722-3858)
[»] scaffold0223 (2 HSPs)
scaffold0223 (296-380)||(15922-16006)
scaffold0223 (137-225)||(16079-16168)
[»] scaffold0217 (1 HSPs)
scaffold0217 (121-224)||(25584-25688)
[»] scaffold0051 (1 HSPs)
scaffold0051 (104-179)||(20062-20138)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 143 - 408
Target Start/End: Original strand, 21613032 - 21613295
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcat 242  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  21613032 ttaagtcacgcaccattggcatgtgcgcgagttaactcacgcagcttgaccggtggtcagaactgaagaactcacgtttttgga-ccgtgttcaaagcat 21613130  T
Q  243 tttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacc 342  Q
    |||||||||||||| | |||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21613131 tttaattggttttgcacgtttttgttaagttatttcacgtttttttactatatttatggtagatataacctatgttacaatctccccctataaatacacc 21613230  T
Q  343 tctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc-ccccctatg 408  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||| |||||||||    
T  21613231 tctaaacttccccttttc--cacaccatctcacattctcactctcttcctcactctctccccctatg 21613295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 48219530 - 48219703
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| ||||  | |||||||||||    || ||||| |||| ||  |||||||||||||||||||||||||||||||||||| |    
T  48219530 tgttcaatgcattttaattgtttttacacgtttttgttaagtttttacacgttttttgaccctatttatggtagatataacctatgttacaatctcccac 48219629  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||| ||||    
T  48219630 tataaatacacctctaaacttccccatttcctcacaccatctcgcattctcactctcctcctcagtctctcccc 48219703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 20377810 - 20377921
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||    
T  20377810 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaactttcccatttcttcacaccatctcacattctcactctcctcct 20377909  T
Q  393 cactctcccccc 404  Q
    ||||||| ||||    
T  20377910 cactctctcccc 20377921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 404
Target Start/End: Complemental strand, 26501133 - 26500961
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| |||   | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  26501133 tgttcaatgcattttaattgttttaacacgtttttgttaactttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 26501034  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  26501033 tataaatacacctctaaacttcccaatttcctcaca-catctcacattctcactctcctcctcactctctcccc 26500961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 26591580 - 26591752
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| |||   | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  26591580 tgttcaatgcattttaattgttttaacacgtttttgttaactttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 26591679  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  26591680 tataaatacacctctaaacttcccaatttcctcaca-catctcacattctcactctcctcctcactctctcccc 26591752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 39476482 - 39476618
Alignment:
Q  90 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 188  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | || | |||||||||||||||||||| |     
T  39476482 tagttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcacca 39476581  T
Q  189 tgactggtggtcagaactgaagaactcacgttttttg 225  Q
    || | |||||||||| |||||||||  ||||||||||    
T  39476582 tggccggtggtcagagctgaagaacaaacgttttttg 39476618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 41219493 - 41219372
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||| |||||| ||||| ||||||| || ||||||| |||||||||||| ||||||| | ||||||||||||||||||||  ||| ||||||||||||    
T  41219493 gcgtgatttaacttgcgcatcttataacctctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcaga 41219394  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  41219393 actgaagaacaaacgttttttg 41219372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 37524267 - 37524169
Alignment:
Q  112 taactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 210  Q
    |||||| |||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||| ||||||||  ||| |||||||||||||||||||    
T  37524267 taactaacgcaccttataagctctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtcagaactgaag 37524169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 8260848 - 8260969
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcag 202  Q
    |||||||||||||   |||||||||||||| ||||||| |||||||||||||||||| || | ||||||||||||||||||||  ||| | |||||||||    
T  8260848 gcgtgacttaactcatgcaccttataatctctgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcag 8260947  T
Q  203 aactgaagaactcacgtttttt 224  Q
    |||||| ||||  |||||||||    
T  8260948 aactgatgaacaaacgtttttt 8260969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 27874143 - 27874038
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||| ||||||| ||||||| ||||| || ||||||| ||||| |||||||||||| | | ||||||||||||||||||||  ||| | ||||||||||    
T  27874143 gcgtggcttaacttgcgcaccatataacctctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttggccggtggtcaga 27874044  T
Q  204 actgaa 209  Q
    ||||||    
T  27874043 actgaa 27874038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 21612957 - 21613036
Alignment:
Q  19 attttagatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag 97  Q
    ||||||||||||| |||||| |||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||    
T  21612957 attttagatttctgctcttcgccctgtacttttctctcgcatccagttgaaaagacattaatgcccttgtgctagttaag 21613036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 21153754 - 21153844
Alignment:
Q  135 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||  | | | ||||||| || |||||||||  ||||||||||    
T  21153754 tgcgtgagttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacagacgttttttg 21153844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 2913244 - 2913148
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||| ||||||||||| |||||||||| |||| ||   | ||||||||||  |||| |||||||| ||||| ||||||||||||||||||||    
T  2913244 tttttactacatttatggtagttataacctatattaccattctcacctataaatatccctccaaacttccacattttctcacaccatctcacattct 2913148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 18239525 - 18239401
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| |  ||||||||||  | || |||| |||||||||||| || |||| | |||||||||||||| |||||  |||   ||||||||||    
T  18239525 gcgtgacttaacttgtacaccttataacatctgtgtgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgttggtcggtggtcaga 18239426  T
Q  204 actgaagaactcacgttttttgaac 228  Q
    ||||||||||  |||||||||||||    
T  18239425 actgaagaacaaacgttttttgaac 18239401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 8725791 - 8725898
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    |||| |||| |||||| |||| ||||||||||||||  ||  |  ||||||||||| |||| |||||| | ||||||||||||||||||| |||||| ||    
T  8725791 ttttgactacatttattgtagttataacctatgttatcattccaacctataaatacccctccaaactttctcatttcctcacaccatctctcattctcac 8725890  T
Q  384 tctcttcc 391  Q
    ||||||||    
T  8725891 tctcttcc 8725898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 34354492 - 34354429
Alignment:
Q  119 cgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcac 182  Q
    |||||||||||  || ||||||| |||||||||| ||||||||| | |||||||||||||||||    
T  34354492 cgcaccttatatgctctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcac 34354429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 29714268 - 29714349
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    ||||||||||| |  |||||||||||  || ||||||| |||||||| ||||||||| | || ||||||||||||||||||||    
T  29714268 gcgtgacttaaatcacgcaccttatag-ctctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcag 29714349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 3742490 - 3742437
Alignment:
Q  98 catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcac 151  Q
    |||||||||||| ||||||||||||| ||||||||| || |||| |||||||||    
T  3742490 catgcagcgtgatttaactagcgcactttataatctctgtgtgacttaagtcac 3742437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 37449985 - 37450078
Alignment:
Q  118 gcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 210  Q
    |||||||||||||||||||||||| ||||||| |||| ||||| || | ||| ||||||||||  ||||  ||||| |||||| | ||||||||    
T  37449985 gcgcaccttataatctttgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaag 37450078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 18239320 - 18239269
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  18239320 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 18239269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 39283955 - 39284014
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    |||||||| |||||||  ||||||| |||| || ||||||| ||||||||||||||||||    
T  39283955 gcagcgtggcttaactcacgcacctcataagctctgcgtgacttaagtcacgcaccactg 39284014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 35126315 - 35126275
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacg 183  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  35126315 ttaagtcacgcacaactggtctgtgcgcgagttaactcacg 35126275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 104 - 404
Target Start/End: Complemental strand, 6755833 - 6755533
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||||  |||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||  ||| | |||||| |||    
T  6755833 gcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttggccggtggttaga 6755734  T
Q  204 actgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggta 303  Q
     || |||||| ||||||||||| ||  ||||||| |||||||||||| ||||| | ||||||||| |    |||||||| |||| |||||||||||||||    
T  6755733 gctcaagaacacacgttttttggactttgttcaatgcattttaattgattttgcacgtttttgtttagttttttcacgttttttgactatatttatggta 6755634  T
Q  304 gatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctccccc 403  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  6755633 gatataacctatgttacaatctccccctataaatacatctctaaactttcccatttcctcacaccatctcatattctcactctcatcctcactctccccc 6755534  T
Q  404 c 404  Q
    |    
T  6755533 c 6755533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 14995068 - 14995430
Alignment:
Q  20 ttttagatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaacta 117  Q
    |||||||||| | |||||| ||||  |||||||  ||||||||||||||||| |||||||| |||||  |||||||||| || |||||||||||||||||    
T  14995068 ttttagatttttgctcttcgccctgcacttttcattcgcacccagctgaaaagacattaatacccctacgctagttaagtcacgcagcgtgacttaacta 14995167  T
Q  118 gcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgt-gcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactca 216  Q
     | |||||||||||||||| |||| ||||||||| |||||||| ||| | |||||||||||||||||||  ||| |  || | |||||||||||||| ||    
T  14995168 acacaccttataatctttgtgtgagttaagtcacacaccactgacattttgcgcgagttaactcacgcacattggccagtagccagaactgaagaacaca 14995267  T
Q  217 cgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggtagatataacctat 315  Q
     |||||||| || |||||||| |||||||||||||||||| | ||||||||||     |||||||| ||||| ||||||||||||||||||| |||||||    
T  14995268 tgttttttggacggtgttcaatgcattttaattggttttgcacgtttttgttatgttttttcacgtttttttgactatatttatggtagatacaacctat 14995367  T
Q  316 gttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 378  Q
    |||||||||||| ||||||||||||||| |||| || ||||||| ||||||||||||||||||    
T  14995368 gttacaatctcctcctataaatacacctataaaatttcccattttctcacaccatctcacatt 14995430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 104 - 408
Target Start/End: Original strand, 6462964 - 6463269
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||||  |||||||||||| ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||  ||| | |||||| | |    
T  6462964 gcgtgacttaactcacgcaccttataagctttgtgtgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagttggccggtggttaaa 6463063  T
Q  204 actgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggt 302  Q
     || ||||||  | |||||||| ||  ||||||| |||||||||||||||||| | |||||||||||    |||||||| ||||| ||||||||||||||    
T  6463064 gctcaagaacaaatgttttttggactttgttcaatgcattttaattggttttgcacgtttttgttaagttttttcacgtttttttgactatatttatggt 6463163  T
Q  303 agatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccc 402  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||    
T  6463164 agatataacctattttacaatctccccttaaaaatacacctctaaacttccccatttcctcacaccatctcacattctcactctcatcctcactgtctcc 6463263  T
Q  403 cctatg 408  Q
    ||||||    
T  6463264 cctatg 6463269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 53825747 - 53825858
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  53825747 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctcactctcctcct 53825846  T
Q  393 cactctcccccc 404  Q
    ||||||||||||    
T  53825847 cactctcccccc 53825858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 81 - 318
Target Start/End: Complemental strand, 7956403 - 7956166
Alignment:
Q  81 cccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaact 179  Q
    |||||| |||||||||| || ||||| |||||||||||||||||||||||   | ||||||| ||||| ||| |||||||| ||||||||||||||||||    
T  7956403 cccctgcgctagttaagtcacgcagcatgacttaactagcgcaccttatatggtgtgcgtgagttaagacacacaccactgacatgtgcgcgagttaact 7956304  T
Q  180 cacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttca 279  Q
    || |||| |||   || ||||| || |||||||| ||||||||||| || |||||||| |||||||||||||||||| | |||||||||||    |||||    
T  7956303 catgcaggttgttcgggggtcaaaattgaagaacacacgttttttggacggtgttcaatgcattttaattggttttgcacgtttttgttaagtt-tttca 7956205  T
Q  280 cgtgtttttactatatttatggtagatataacctatgtt 318  Q
    ||| |||||||||||||||| ||||||||||||||||||    
T  7956204 cgtttttttactatatttatagtagatataacctatgtt 7956166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 42948915 - 42949020
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||    
T  42948915 tatttatggtagatataacctatgctacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcatattctcaccctcctcct 42949014  T
Q  393 cactct 398  Q
    ||||||    
T  42949015 cactct 42949020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 2324137 - 2324057
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctc 373  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  2324137 tatttatggtagatataacctatgttataatctccccctatatatacacctctaaactttcccatttcctcacaccatctc 2324057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 39415314 - 39415435
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||| |||||| |||||||||||||||  ||| | | |||| |||    
T  39415314 gcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttggccgatggttaga 39415413  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  39415414 actgaagaacaaacgttttttg 39415435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 208 - 365
Target Start/End: Complemental strand, 42384576 - 42384420
Alignment:
Q  208 aagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagata 307  Q
    |||||| |||||||||||| |  ||||||| |||||||||||  ||||  |||||| |||||| |  |  ||| | |||| ||  ||||||||||| |||    
T  42384576 aagaacacacgttttttga-ctttgttcaatgcattttaattatttttacatgtttctgttaagatttaacacattttttgaccctatttatggtacata 42384478  T
Q  308 taacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcac 365  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42384477 taacctatgttacaatctccccctataaatacacctctaaactttcccatttcctcac 42384420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 310 - 380
Target Start/End: Complemental strand, 7955585 - 7955515
Alignment:
Q  310 acctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7955585 acctatgttacaatctccccttataaatacacctctaaacttctccatttcctcacaccatctcacattct 7955515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 25574767 - 25574916
Alignment:
Q  77 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 175  Q
    ||||||| || || ||||||| ||||| ||||||||||||| | ||||||| ||| || || |||| |||||||||||||||||||| | ||||||||||    
T  25574767 aatgcccttgcgcaagttaagtcatgccgcgtgacttaacttgtgcaccttgtaacctctgtgtgacttaagtcacgcaccactggcctatgcgcgagtt 25574866  T
Q  176 aactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||||||||  |||   ||||||||||||||||||||  ||||||||||    
T  25574867 aactcacgcacgttggtcggtggtcagaactgaagaacaaacgttttttg 25574916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 48086811 - 48086932
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| ||||||||||||| || ||| ||| |||||||||||||||||||| | ||||||||||||||||||||  ||| | ||||||||||    
T  48086811 gcgtgacttaacttgcgcaccttataacctctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtcaga 48086910  T
Q  204 actgaagaactcacgttttttg 225  Q
    |||||  |||  ||||||||||    
T  48086911 actgactaacaaacgttttttg 48086932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 25886181 - 25886306
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    |||| |||| ||||||||||| |||||||||| |||  ||  || ||||||||||  |||| ||||||| ||||||||||||||||||||||| ||| ||    
T  25886181 ttttgactacatttatggtagttataacctatcttatcattcccacctataaatatccctccaaacttctccatttcctcacaccatctcacactctcac 25886280  T
Q  384 tctcttcctcactctc-ccccctatg 408  Q
    |||| |||||| |||| |||||||||    
T  25886281 tctcctcctcattctctccccctatg 25886306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 25745076 - 25744971
Alignment:
Q  275 tttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaactt-ccccatttcctcacaccatctc 373  Q
    |||||||| |||| |||||||||||||||| |||||||||| |||  ||  || | ||||||||| ||||  ||||| |||||||| || ||||||||||    
T  25745076 tttcacgttttttgactatatttatggtagttataacctattttattattcccacttataaatacccctcctaacttcccccattttcttacaccatctc 25744977  T
Q  374 acattc 379  Q
    ||||||    
T  25744976 acattc 25744971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 37282227 - 37282182
Alignment:
Q  115 ctagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||    
T  37282227 ctagcgcaccttataagctttgcgtgacttaagtcacgcaccactg 37282182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 23029588 - 23029672
Alignment:
Q  77 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    ||||||| || |||||||||| || ||||||||||||||||  |||| || |||| |||||||||| |||||||| |||||||||    
T  23029588 aatgcccttgcgctagttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtgacttaagtcatgcaccactg 23029672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 48087001 - 48087087
Alignment:
Q  294 atttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||| |||||||||||   ||| ||  || ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  48087001 atttatggtggatataacctacactaccattcccacctataaatacccctccatacttccctatttcctcacaccatctcactttct 48087087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 49742234 - 49742161
Alignment:
Q  88 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    |||||||||| || ||||||||||||||||  ||||||| | || || ||||||| ||||||||||||||||||    
T  49742234 gctagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactg 49742161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 39415502 - 39415590
Alignment:
Q  292 atatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| | |||||||||   ||| ||  || ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  39415502 atatttatggtggttataacctacactaccattcccacctataaatacccctccatacttccctatttcctcacaccatctcactttct 39415590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 2182607 - 2182556
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcac 155  Q
    ||||||||||||| ||||||||||||| || ||| ||| |||||||||||||    
T  2182607 gcgtgacttaacttgcgcaccttataacctctgcttgatttaagtcacgcac 2182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 25575020 - 25575071
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  25575020 cctataaatactcctccatacttccctatttcctcacaccatctcactttct 25575071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 50561451 - 50561492
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgc 184  Q
    |||||||| |||||||| || |||||||||||||||||||||    
T  50561451 ttaagtcatgcaccacttgcctgtgcgcgagttaactcacgc 50561492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Original strand, 32211322 - 32211366
Alignment:
Q  336 atacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    |||| |||| ||||||||||||||| |||||| ||||||||||||    
T  32211322 atacccctcaaaacttccccatttcttcacactatctcacattct 32211366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 24 - 391
Target Start/End: Complemental strand, 24608354 - 24607985
Alignment:
Q  24 agatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaagc-atgcagcgtgacttaactagcgc 121  Q
    |||||||| |||||| ||||  |||| || || ||||||||||||||| ||| |||||||||||   ||||||||  | |||||| ||||||||||||||    
T  24608354 agatttctcctcttcaccctgcacttatcgctggcacccagctgaaaagacaataatgcccctgcattagttaagttacgcagcgagacttaactagcgc 24608255  T
Q  122 accttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttt 221  Q
    ||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||  ||| | |||||| ||| || || ||| |||| ||    
T  24608254 accttataatctttgtgtgagttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagttggccggtggttagagctcaaaaacacacgctt 24608155  T
Q  222 tttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttaca 321  Q
    |||| ||  || |||| |||||||||||||||||| | |||||||||||    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  24608154 tttggactttggtcaatgcattttaattggttttgcacgtttttgttaagttttttcacgttttttgactatatttatggtagatataacctatgttaca 24608055  T
Q  322 atctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcc 391  Q
    ||||||| |||||||||| |||||||| || |||||||||||||||||||||||||||  ||||||||||    
T  24608054 atctccctctataaatacccctctaaattttcccatttcctcacaccatctcacattcccactctcttcc 24607985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 375
Target Start/End: Complemental strand, 40962781 - 40962538
Alignment:
Q  135 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggt-ggtcagaactgaagaactcacgttttttgaaccgtgt 233  Q
    ||||||| ||||||||| |||||||||||| ||| ||||||||||||||||| ||| | ||| ||||||| || |||||  ||||||||||| ||  ||     
T  40962781 tgcgtgagttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccggttggtcagagctcaagaatacacgttttttggactttgg 40962682  T
Q  234 tcaaagcattttaattggttttgtatgtttttgttaaaaaattt--cacgtgtttttactatatttatggtagatataacctatgttacaatctccccct 331  Q
    ||||   |||||||||||||||| | |||||| |||     |||  ||| | |||| ||||||||||||||||||||||||||||||||||||||| | |    
T  40962681 tcaagtgattttaattggttttgcacgttttttttactttgttttacacattttttgactatatttatggtagatataacctatgttacaatctcctcat 40962582  T
Q  332 ataaatacacctctaaacttccccatttcctcacaccatctcac 375  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  40962581 ataaatacacctccaaacttccccatttcctcacaccatctcac 40962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 46815193 - 46815367
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  46815193 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 46815292  T
Q  331 tataaatacacctct-aaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||    
T  46815293 tataaatacacctctaaaacttccccatttcctcacaccaactcacattctcactctcctcctcactctctcccc 46815367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 231 - 399
Target Start/End: Original strand, 33163083 - 33163251
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  || |||||||||||||||||||||||||||||||||||    
T  33163083 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctacttatggtagatataacctatgttacaatctccccc 33163182  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc 399  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||    
T  33163183 tataaatacacctctaaacttccccatttcctcacaccaactcacattttcactctcctcctcactctc 33163251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 49065669 - 49065549
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||| | |||||||||||||||||||| |||| | ||||||||||    
T  49065669 gcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaga 49065570  T
Q  204 actgaagaactcacgtttttt 224  Q
     |||||||||  |||||||||    
T  49065569 gctgaagaacaaacgtttttt 49065549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 398
Target Start/End: Original strand, 53267272 - 53267377
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| || ||| ||||||||| |||||| ||||    
T  53267272 tatttgtggtagatataacctatgttacaatctccccctataaatacacctctaaacttcttcatttcctcgcagcatttcacattctcactctcctcct 53267371  T
Q  393 cactct 398  Q
    ||||||    
T  53267372 cactct 53267377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 225
Target Start/End: Complemental strand, 21713311 - 21713162
Alignment:
Q  77 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 175  Q
    ||||||| || |||||||||| || ||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||| |||| | ||| ||||||    
T  21713311 aatgcccttgcgctagttaagtcacgcagcgtgatttaactagcgcaccttataatctatgcgtggcttaagtcacgcaccaatggcctatgcacgagtt 21713212  T
Q  176 aactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||||||||| | || | |||||||||| |||||||||  ||||||||||    
T  21713211 aactcacgcaacatggccggtggtcagagctgaagaacaaacgttttttg 21713162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 13867749 - 13867647
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 377  Q
    ||||| |||| ||||||||||| |||| ||||||||||||||| ||  || ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  13867749 cacgttttttgactatatttattgtagttataacctatgttaccattcccacctataaatactcctccaaacttccccatttcctcacaccatctcacat 13867650  T
Q  378 tct 380  Q
    |||    
T  13867649 tct 13867647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 363
Target Start/End: Original strand, 28797930 - 28798063
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaattt-cacgtgtttttactatatttatggtagatataacctatgttacaatctcccc 329  Q
    ||||||| |||||||||||| ||||  | |||||||||||| | ||  ||| | |||| ||  ||||||||||||||| |||||||||||||||||||||    
T  28797930 tgttcaatgcattttaattgtttttacacgtttttgttaaagatttaacacattttttgaccctatttatggtagatacaacctatgttacaatctcccc 28798029  T
Q  330 ctataaatacacctctaaacttccccatttcctc 363  Q
     |||||| ||||||||||||||||||||||||||    
T  28798030 ttataaaaacacctctaaacttccccatttcctc 28798063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 36173175 - 36173103
Alignment:
Q  332 ataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  36173175 ataaatacacctctaaacttccccatttcctcacaccatctcacattcccactctcctcctcactctctcccc 36173103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 27761248 - 27761126
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||| |||| | |||||||||||||||| ||||||| ||||||||||||||||| || | ||||||||||||||||| ||  ||| | ||| ||||||    
T  27761248 gcgtgatttaatttgcgcaccttataatctctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttggccggtagtcaga 27761149  T
Q  204 actgaagaactcacgttttttga 226  Q
    ||| ||||||  |||||||||||    
T  27761148 actcaagaacaaacgttttttga 27761126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 42039026 - 42039115
Alignment:
Q  147 gtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttca 236  Q
    |||||||||||||||| ||||||||||||||||||||||  ||| | ||||||||||||||||||||  |||||||||| || |||||||    
T  42039026 gtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaacagacgttttttggacggtgttca 42039115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 49261720 - 49261600
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    ||||||||| |||||| ||||  ||||| |||||||| ||  || ||||||||||  |||| |||||||| |||||||||||| ||||||||||||| ||    
T  49261720 tttttactacatttattgtagtcataacatatgttactattcccacctataaatatccctccaaacttcctcatttcctcacatcatctcacattctcac 49261621  T
Q  384 tctcttcctcactctcccccc 404  Q
    |||| ||||||||||| ||||    
T  49261620 tctcctcctcactctctcccc 49261600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 408
Target Start/End: Original strand, 372822 - 372947
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    ||||||||  |||||| |||| |||||| |||||||| ||  || ||||||||| | |||| |||||||||||||| |||||||||||||||||| | |     
T  372822 tttttactgcatttattgtagttataacatatgttaccattcccacctataaattcccctccaaacttccccattttctcacaccatctcacattttcat 372921  T
Q  384 tctcttcctcactctc-ccccctatg 408  Q
    || ||||||||||||| |||||||||    
T  372922 tcacttcctcactctctccccctatg 372947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 9243036 - 9242917
Alignment:
Q  105 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||  | ||||||||||||| ||||||| |||||||||||||||||| || | | ||||||||||||||||||  ||| | ||| ||||||    
T  9243036 cgtgacttaactcacacaccttataatctctgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcaga 9242938  T
Q  204 actgaagaactcacgtttttt 224  Q
    ||||||||||  |||||||||    
T  9242937 actgaagaacaaacgtttttt 9242917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 40221095 - 40221191
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||| ||||||||||  ||||||||||||||| ||  || ||| ||||| | |||| |||||||| ||||||||||||||||||||||||||    
T  40221095 tttttactacatttatggtatttataacctatgttaccattcccacctgtaaatgcccctccaaacttcctcatttcctcacaccatctcacattct 40221191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 13856027 - 13855925
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 377  Q
    ||||| |||| |||||||| || |||| ||||||||||||||| ||  || ||||||||||  |||| ||| |||| |||||||||||||||||||||||    
T  13856027 cacgttttttgactatattaattgtagttataacctatgttaccattcccacctataaatatccctccaaaattcctcatttcctcacaccatctcacat 13855928  T
Q  378 tct 380  Q
    |||    
T  13855927 tct 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 38131410 - 38131528
Alignment:
Q  107 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 206  Q
    |||||||||| ||||||||| ||| || || |||| |||||||||||||||| ||| | ||| ||||||||||||||||  ||  | |||||||| ||||    
T  38131410 tgacttaacttgcgcaccttctaacctctgtgtgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgttagccggtggtcacaact 38131509  T
Q  207 gaagaactcacgttttttg 225  Q
    |||||||  ||||||||||    
T  38131510 gaagaacaaacgttttttg 38131528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 31936437 - 31936317
Alignment:
Q  107 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 206  Q
    ||||||||||  ||||||||||   ||||| |||| |||||||||||||||||||| || |||||||||||||||||||| ||| | | ||||| || ||    
T  31936437 tgacttaactcacgcaccttattg-ctttgtgtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggttggccgatggtctgagct 31936339  T
Q  207 gaagaactcacgttttttgaac 228  Q
     || ||| ||||||||||||||    
T  31936338 caaaaacacacgttttttgaac 31936317  T

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Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 2777940 - 2778024
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 185  Q
    ||||||||||||||||  ||||||||||||  | ||||| | ||||||||| | |||||||| ||||||||||||||||||||||    
T  2777940 gcagcgtgacttaactcacgcaccttataagttctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgca 2778024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 372703 - 372785
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| ||| | ||||||| || || |||||| |||||||||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaacacacgttttttg 372785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 14289680 - 14289755
Alignment:
Q  106 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactca 181  Q
    |||||||||||||||||||||||||| | || |||| ||||||||| ||||||||   | ||||||||||||||||    
T  14289680 gtgacttaactagcgcaccttataatatatgtgtgacttaagtcacacaccactgatctatgcgcgagttaactca 14289755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 18414113 - 18414019
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 378  Q
    ||||||||| ||||||||||| ||||||||||||||  ||  || |||||| |||| |||| |||||||| ||||| |||||| ||| |||||||    
T  18414113 tttttactacatttatggtagttataacctatgttatcattcccacctatatatactcctccaaacttcctcattttctcacatcatttcacatt 18414019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 32935692 - 32935774
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||||||||||||||| || | ||||||||||||||||||||  ||| | ||||| |||| |||||||||  ||||||||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaacgttttttg 32935774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 17212619 - 17212570
Alignment:
Q  359 tcctcacaccatctcacattctaactctcttcctcactctcccccctatg 408  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  17212619 tcctcacaccatctcacattctcattctcctcctcactctcccccctatg 17212570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 16525160 - 16525077
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactgg-tggtcagaactgaagaactcacgttttttg 225  Q
    |||| |||||||||| ||||||| | |||||||||||||||||| ||||| || |||||||| || || ||| |||||||||||    
T  16525160 ttaactcacgcaccattggcatgggtgcgagttaactcacgcaggttgacgggttggtcagagctcaaaaacacacgttttttg 16525077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 49261871 - 49261821
Alignment:
Q  136 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    |||||| |||||||||||||||||| ||||||||| ||||||| |||||||    
T  49261871 gcgtgacttaagtcacgcaccactgacatgtgcgcaagttaacccacgcag 49261821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 31823010 - 31823059
Alignment:
Q  106 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcac 155  Q
    ||||||||||| ||||||||||||| |||||||||| |||| ||||||||    
T  31823010 gtgacttaacttgcgcaccttataagctttgcgtgagttaactcacgcac 31823059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 31823039 - 31823098
Alignment:
Q  166 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||| |||||||||||||||  ||| | ||||||||||||||||||||  ||||||||||    
T  31823039 tgcgtgagttaactcacgcacgttggccggtggtcagaactgaagaacaaacgttttttg 31823098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 380
Target Start/End: Complemental strand, 31936251 - 31936165
Alignment:
Q  294 atttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||||||||| |||| ||   | ||||||||||| |||| | ||||||| ||||||||||| ||| |||| ||||    
T  31936251 atttatggtagttataacctatattaccattctcacctataaatacccctccatacttccctatttcctcacagcatatcactttct 31936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 13856148 - 13856059
Alignment:
Q  136 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||||| |||||||||||| |||||||   ||| | ||||||||||||||| ||| | ||||||| || || |||||| || ||||||||    
T  13856148 gcgtgacttaagtcacgcatcactggccgatgcacaagttaactcacgcaggttggccggtggtctgagctcaagaacacaggttttttg 13856059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 14990200 - 14990155
Alignment:
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcaca 376  Q
    ||||||||| |||| |||||||||||||| | ||||||||||||||    
T  14990200 tataaatacccctccaaacttccccattttcccacaccatctcaca 14990155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 378
Target Start/End: Original strand, 47983569 - 47983915
Alignment:
Q  25 gatttcttctcttctccctatacttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaactagcgca 122  Q
    ||||||| |||||| ||||  ||||||| ||| ||| |||||||||| ||  ||||||||||||| || ||||| || ||||||||||||||||| ||||    
T  47983569 gatttctgctcttccccctgcacttttcgctcccactcagctgaaaagaccataatgcccctgtgttatttaagtcacgcagcgtgacttaactaacgca 47983668  T
Q  123 ccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtttt 222  Q
    |||||||   | ||||||| |||||||||  |||||||||||||||||||||||||| |||||  ||| | ||||||||||||| |||||| ||||||||    
T  47983669 ccttatatgttctgcgtgagttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttggccggtggtcagaactaaagaacacacgtttt 47983768  T
Q  223 ttgaaccgtg-ttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttaca 321  Q
    ||| || ||| ||||| |||||||||||||||||| | |||||||||||          || |||| ||||||||||||||| |||||||||||||||||    
T  47983769 ttggacggtgtttcaatgcattttaattggttttgcacgtttttgttaa----------gttttttgactatatttatggtaaatataacctatgttaca 47983858  T
Q  322 atctccccctataaatacacctctaaacttccccatttcctcacaccatctcacatt 378  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| |||||||||||    
T  47983859 atctccccttataaatacacctctaaacttcccattttcctcacatcatctcacatt 47983915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 107 - 376
Target Start/End: Complemental strand, 18844093 - 18843823
Alignment:
Q  107 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 206  Q
    ||||||||||| | ||| |||||   | ||||||| ||||||||| ||||||||| |||||||| ||||||||||||||  ||| | |||| ||||||||    
T  18844093 tgacttaactaacacactttatatgttctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaact 18843994  T
Q  207 gaagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttt-actatatttatggtaga 305  Q
    ||||||| ||||||||||  || |||||||| |||||||||||| ||||||| |||||||||||    || ||||| ||||| |||||||||||||||||    
T  18843993 gaagaacacacgttttttagacggtgttcaatgcattttaattgattttgtacgtttttgttaagttgttgcacgtttttttgactatatttatggtaga 18843894  T
Q  306 tataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcaca 376  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  18843893 tataatctatgttacaatctccccctataaatacacctctaaactccctcatttcctcacacaatctcaca 18843823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 121 - 404
Target Start/End: Complemental strand, 5766924 - 5766640
Alignment:
Q  121 caccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtt 220  Q
    |||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||||||| ||   |||| |||||| ||| || || ||| ||| ||    
T  5766924 caccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagttaactcacacaaggtgaccggtggttagagcttaaaaacacacttt 5766825  T
Q  221 ttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgttttta-ctatatttatggtagatataacctatgtta 319  Q
    ||||| ||  || ||||   | |||||||||||||| | ||||||    |    || ||||  |||||  |||| |||||||||||||||||||||||||    
T  5766824 ttttggactttggtcaagtgaatttaattggttttgcacgttttttactatgttttacacgattttttggctatgtttatggtagatataacctatgtta 5766725  T
Q  320 caatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||| |||||| |||||||||| |||||    
T  5766724 caatctccccctataaatacacctccaaactttcccattttcacacaccatctcacattctcactctcctcctcactcttccccc 5766640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 231 - 404
Target Start/End: Complemental strand, 45690599 - 45690425
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| ||||  | |||||||||||    || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||    
T  45690599 tgttcaatgcattttaattgtttttacacgtttttgttaagtttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccc 45690500  T
Q  331 -tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||    
T  45690499 ctataaatacacctctaaacttccccatttcctcacatcatctcacattctcactctcctcctcactctctcccc 45690425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 278 - 408
Target Start/End: Original strand, 27034189 - 27034320
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 377  Q
    ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||    
T  27034189 cacgttttttgactctatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttctccatttcctcacaccatcttccat 27034288  T
Q  378 tctaactctcttcctcactctc-ccccctatg 408  Q
    ||  |||||| ||||||||||| |||||||||    
T  27034289 tcccactctcctcctcactctctccccctatg 27034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 50066978 - 50067084
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  50066978 tattaatggtagatataacctatgttacaatc-ccccctataaatacatctctaaacttccccatttcctcacaccatctcacattctcactctcctcct 50067076  T
Q  393 cactctcc 400  Q
    ||||||||    
T  50067077 cactctcc 50067084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 408
Target Start/End: Complemental strand, 5767540 - 5767416
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| ||    
T  5767540 ttttgactatatttatggtagatataacctatgttacaatctcctc-tataaatacacttccaaacttccccattttctcacaccatctcacattctcac 5767442  T
Q  384 tctcttcctcactctc-ccccctatg 408  Q
    |||| |||| |||||| |||||||||    
T  5767441 tctcctcctgactctctccccctatg 5767416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 3660297 - 3660175
Alignment:
Q  102 cagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtca 201  Q
    ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||| | |||||||||||||||||||| |||| | ||||||||    
T  3660297 cagcgtgacttaactagcgcaccttataagctctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtca 3660198  T
Q  202 gaactgaagaactcacgtttttt 224  Q
    || |||||||||  |||||||||    
T  3660197 gagctgaagaacaaacgtttttt 3660175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 47486783 - 47486880
Alignment:
Q  302 tagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||| |||||| |||| ||||||    
T  47486783 tagatataacctatgttacaatctccccctataaatacacctctaaacttctccattttctcactccaactcacattctcactctcctcctgactctc 47486880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 39222654 - 39222792
Alignment:
Q  88 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||| | ||| ||||||||||||||||     
T  39222654 gctagttaagtcacgcagcgtgacttaactagcgcgccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcac 39222753  T
Q  187 cttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    | ||   |||||||||| |||||||||  ||||||||||    
T  39222754 catggtcggtggtcagagctgaagaacaaacgttttttg 39222792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 46923718 - 46923855
Alignment:
Q  77 aatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtt 175  Q
    ||||||| || |||||||| | || ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||    
T  46923718 aatgcccttgcgctagttacgtcacgcaacgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcaccaatggcctatgcgcgagtt 46923817  T
Q  176 aactcacgcagcttgactggtggtcagaactgaagaac 213  Q
    |||||||||| | || | ||||||||||  ||||||||    
T  46923818 aactcacgcaccatgtccggtggtcagagatgaagaac 46923855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 48566726 - 48566847
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| ||  ||||||||| |||||||||| ||||||||||||  |||||| | ||||||||||||||||||||  ||| ||||||||||||    
T  48566726 gcgtgacttaacttgcagaccttataacctttgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcaga 48566825  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  48566826 actgaagaacaaacgttttttg 48566847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 23602892 - 23602780
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    ||||||||| ||||||||||| ||||||||||||||| ||   | ||||||||||  |||||||||||||||||||||||||||||| ||| ||||| ||    
T  23602892 tttttactagatttatggtagttataacctatgttaccattctcacctataaatatccctctaaacttccccatttcctcacaccatttcatattctcac 23602793  T
Q  384 tctcttcctcact 396  Q
    |||| ||||||||    
T  23602792 tctcctcctcact 23602780  T

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Target: chr1; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 225
Target Start/End: Original strand, 41871704 - 41871822
Alignment:
Q  107 tgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaact 206  Q
    |||||||||| ||||||||||||| || || |||| |||||| ||||||||||||| | ||||||||||||||||||||  ||| | |||||| ||||||    
T  41871704 tgacttaacttgcgcaccttataacctctgtgtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtaagaact 41871803  T
Q  207 gaagaactcacgttttttg 225  Q
    |||||||  ||||||||||    
T  41871804 gaagaacaaacgttttttg 41871822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 5770680 - 5770599
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 185  Q
    |||||||||||||  |||||||||||| |||||||||  |||||||||||||||||||| |||||||||| |||||||||||    
T  5770680 gcgtgacttaactcacgcaccttataagctttgcgtggcttaagtcacgcaccactggcctgtgcgcgagctaactcacgca 5770599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 21482871 - 21482983
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 200  Q
    ||||||||||||||||| | |||||||||| || ||||||| ||||||||||||||||| || | ||| ||||||||||||||||  ||| | | |||||    
T  21482871 gcagcgtgacttaactaacacaccttataagctctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttggccgatggtc 21482970  T
Q  201 agaactgaagaac 213  Q
    ||| |||||||||    
T  21482971 agagctgaagaac 21482983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 6086477 - 6086538
Alignment:
Q  326 ccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 387  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  6086477 ccccctataaatacacctctaaacttcctcatttcctcacaacatctcacattctcactctc 6086538  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 10308439 - 10308517
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaact 179  Q
    |||||| |||||||||  ||||||| | || ||||| |||| ||||||||||||||||||||||||||| |||||||||    
T  10308439 gcagcgagacttaactcacgcacctcacaagctttgtgtgacttaagtcacgcaccactggcatgtgcgtgagttaact 10308517  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 49597193 - 49597270
Alignment:
Q  136 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaac 213  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||  |||   ||||||||||||| ||||||    
T  49597193 gcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaac 49597270  T

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Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 46178671 - 46178730
Alignment:
Q  166 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||||  ||||||||||    
T  46178671 tgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaacgttttttg 46178730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 33686665 - 33686586
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaact 179  Q
    |||||| |||||||||  ||||||| | || |||||||||| |||||||||||||||||| || | ||||||||||||||    
T  33686665 gcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 33686586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 3782094 - 3782144
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattc 379  Q
    ||||||||||| |||| |||||||| ||||| |||||||||||||||||||    
T  3782094 cctataaatacccctccaaacttcctcattttctcacaccatctcacattc 3782144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 1671447 - 1671324
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggt 199  Q
    |||||||||||||| |  ||||||||| ||  |||||  || |||||||||| ||||||| || | ||||||||||||| ||||||  |||   ||||||    
T  1671447 gcagcgtgacttaattcacgcaccttacaagttttgcaggacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggt 1671348  T
Q  200 cagaactgaagaactcacgttttt 223  Q
    || |||||||||||  ||||||||    
T  1671347 caaaactgaagaacaaacgttttt 1671324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 9343499 - 9343586
Alignment:
Q  138 gtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||| |||||||| |||| ||||||||| || ||||||||||||||||| || || |||| || || || |||| | |||||||||||    
T  9343499 gtgagttaagtcatgcactactggcatgggcacgagttaactcacgcaggttaaccggtgatccgagctcaagagcacacgttttttg 9343586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 23603076 - 23602993
Alignment:
Q  104 gcgtgacttaactagcgcaccttata-atctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    ||||||||||||| | ||| || ||| ||||  |||||| ||||||||||||| ||| || ||||||||||||||||| |||||    
T  23603076 gcgtgacttaactcgtgcatctaatatatctcagcgtgacttaagtcacgcacaactagcttgtgcgcgagttaactcgcgcag 23602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 49597385 - 49597436
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  49597385 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 49597436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 41871926 - 41871972
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcac 375  Q
    ||||||||||| |||| | ||||||| ||||||||||||||||||||    
T  41871926 cctataaatacccctccatacttccctatttcctcacaccatctcac 41871972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 9343625 - 9343721
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||| | ||||||||||| ||||||||||  ||  ||  || ||||||||||  |||| | ||||||| ||||||||||||||| |||| ||||    
T  9343625 tttttaccacatttatggtagttataacctatactatcattcccacctataaatatccctccatacttccctatttcctcacaccatatcaccttct 9343721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 231 - 380
Target Start/End: Complemental strand, 16710236 - 16710088
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||||||||| | |||||||||||    |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  16710236 tgttcaatgcattttaattggttttgcacgtttttgttaagttttttcacgt-ttttgactatatttatggtagatataacctacgttacaatctccccc 16710138  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16710137 tataaatacacctctaaactttcccatttcctcacaccatctcacattct 16710088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 404
Target Start/End: Complemental strand, 22494808 - 22494635
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||||||||||||||||| ||||||||| ||    
T  22494808 tgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttcaccctatttatggtagatataacctatgtcacaatctcctcc 22494709  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  22494708 tataaatacacctctaaactttcacatttcctcacaccaactcacattctcactctcctcctcactctcccccc 22494635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 29908471 - 29908592
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||| |||||||| | |||||||||||||||| |||  ||| | |||||| |||    
T  29908471 gcgtgacttaacttgcgcaccttataacctctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttggccggtggttaga 29908570  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  29908571 actgaagaacaaacgttttttg 29908592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 12874196 - 12874320
Alignment:
Q  90 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 188  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||||| | ||||| |||||||||||||||||| | | |||||||||||||||||||| ||    
T  12874196 tagttaagtcatgcaacgtgacttaaccagcgcgccttataatctctacgtgacttaagtcacgcaccactgacctatgcgcgagttaactcacgcaact 12874295  T
Q  189 tgactggtggtcagaactgaagaac 213  Q
    |||  |||||| ||| |||||||||    
T  12874296 tgagcggtggtaagagctgaagaac 12874320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 29132780 - 29132632
Alignment:
Q  78 atgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagtta 176  Q
    ||||||||| | |||||||| || ||| ||||||||||||| ||||||||||||  | | ||||| |||||||||||||||| ||| | |||||||||||    
T  29132780 atgcccctgcgttagttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgacttaagtcacgcaccaccggcctatgcgcgagtta 29132681  T
Q  177 actcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||||||||  ||| | |||||||||| |||||||||  ||||||||||    
T  29132680 actcacgcacgttggccggtggtcagagctgaagaacaaacgttttttg 29132632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 16710381 - 16710243
Alignment:
Q  46 acttttctctcgcacccagctgaaaa-acattaatgcccctgtgctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaat 143  Q
    ||||||| ||||||||||  |||||| ||| ||||| || |||| |||||||| || ||||| ||||||||||| |||| ||||||   | ||||||| |    
T  16710381 acttttcgctcgcacccaattgaaaagacaataatgtccatgtgttagttaagtcacgcagcatgacttaactaacgcatcttatatgttctgcgtgagt 16710282  T
Q  144 taagtcacgcaccactggcatgtgcgcgagttaactcac 182  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  16710281 taagtcacgcaccactgacatgtgcacgagttaactcac 16710243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 6903833 - 6903725
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||||   ||||| |||||||| ||||||  ||||||||||||||||||||  |||||||||||||||||| ||  ||| | ||||||||||    
T  6903833 gcgtgacttaactcatgcaccatataatctatgcgtggcttaagtcacgcaccactggccggtgcgcgagttaactcacaca-tttggccggtggtcaga 6903735  T
Q  204 actgaagaac 213  Q
    ||||||||||    
T  6903734 actgaagaac 6903725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 213
Target Start/End: Original strand, 8556189 - 8556315
Alignment:
Q  88 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    |||||||||| || ||| |||||||||||| |||||||||||||||| || |||| |||||||||||| || || | | ||| |||||| |||||| ||     
T  8556189 gctagttaagtcacgcaacgtgacttaactggcgcaccttataatctatgtgtgacttaagtcacgcatcaatgccctatgcacgagtttactcacacac 8556288  T
Q  187 cttgactggtggtcagaactgaagaac 213  Q
    | || | |||||||||| |||||||||    
T  8556289 catggccggtggtcagagctgaagaac 8556315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 28266005 - 28266074
Alignment:
Q  134 ttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||  ||||  ||||||||||    
T  28266005 ttgcgtgagttaggtcacgcaccactgacatgtgcgcgagttaactcacgcacgttgatcggtggtcaga 28266074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 20149490 - 20149444
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcac 375  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  20149490 cctataaatacccctccaaacttccccatttcctcacaccttctcac 20149444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 20149651 - 20149569
Alignment:
Q  166 tgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttcaaagcattttaat 248  Q
    ||||||||||||||||||||  ||| |   |||||| |||||||||||  ||||||||||||| ||| |||| ||||||||||    
T  20149651 tgcgcgagttaactcacgcacgttggccaatggtcataactgaagaacaaacgttttttgaacggtggtcaatgcattttaat 20149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 25685946 - 25685895
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  25685946 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 25685895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 32737992 - 32737934
Alignment:
Q  102 cagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    |||||||||||||  | ||||||||||||  | ||||||| ||||||||||||||||||    
T  32737992 cagcgtgacttaataaacgcaccttataagttgtgcgtgacttaagtcacgcaccactg 32737934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 25686109 - 25686069
Alignment:
Q  166 tgcgcgagttaactcacgcagcttgactggtggtcagaact 206  Q
    ||||||||||||||||||||  ||| |||||||||||||||    
T  25686109 tgcgcgagttaactcacgcacgttggctggtggtcagaact 25686069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 2e-47; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 260 - 404
Target Start/End: Original strand, 43636462 - 43636606
Alignment:
Q  260 gtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccattt 359  Q
    ||||||||||||   || ||||| |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43636462 gtttttgttaaatttttacacgttttttgaccctatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttcccctttt 43636561  T
Q  360 cctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||    
T  43636562 cctcacaccatctcacattctcactctcctcctcactctctcccc 43636606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 284 - 396
Target Start/End: Original strand, 1931498 - 1931610
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||| ||||  | ||||| ||    
T  1931498 tttttactatatttacggtagatataacctatgttacaatctccccctataaatatacctccaaacttccacattttctcacatcatcaaaaattctcac 1931597  T
Q  384 tctcttcctcact 396  Q
    || | ||||||||    
T  1931598 tcccctcctcact 1931610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 43693686 - 43693562
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 200  Q
    ||||||||||||||||||||||||||||||||| || |||| |||| |||||||||| |||| | ||||||||| |||||||||| | || | |||||||    
T  43693686 gcagcgtgacttaactagcgcaccttataatctatgtgtgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcaccatggccggtggtc 43693587  T
Q  201 agaactgaagaactcacgttttttg 225  Q
    ||| |||||||||  ||||||||||    
T  43693586 agagctgaagaacaaacgttttttg 43693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 392
Target Start/End: Original strand, 33775408 - 33775485
Alignment:
Q  315 tgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||||    
T  33775408 tgttacaatctccccctataaatacacctctaaacttcctcatttcctcacaccaactcacattctcactctcctcct 33775485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 34471710 - 34471590
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||| | ||||||||||||||||||||  ||| | |||||| |||    
T  34471710 gcgtgacttaacttgcgcaccttataaactatgcgtgacttaagtcacgcaccattggc-tatgcgcgagttaactcacgcacgttggccggtggttaga 34471612  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  34471611 actgaagaacaaacgttttttg 34471590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 23542861 - 23542752
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    ||||||||||| || | |||| ||||| || ||||||| |||| ||||||||||||||| | |||||||||||||||| |||  |||   ||||||||||    
T  23542861 gcgtgacttaaataacacaccgtataagctctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtcggtggtcaga 23542762  T
Q  204 actgaagaac 213  Q
    ||||||||||    
T  23542761 actgaagaac 23542752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 404
Target Start/End: Complemental strand, 43835262 - 43835142
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaac 383  Q
    ||||||||| |||||| |||| || ||| |||||||| ||   | |||||||||||   |  ||||||||||||||| ||||||||||| ||||||| ||    
T  43835262 tttttactacatttattgtagttaaaacatatgttaccattctcacctataaatacctttgcaaacttccccatttcttcacaccatctaacattctcac 43835163  T
Q  384 tctcttcctcactctcccccc 404  Q
    |||| ||||||||||||||||    
T  43835162 tctcctcctcactctcccccc 43835142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 3964187 - 3964238
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  3964187 cctataaatacccctccaaacttcctcatttcctcacaccatctcacattct 3964238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 3964009 - 3964098
Alignment:
Q  135 tgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||||||||||  ||| | |||||| ||| || |||||| || ||||||||    
T  3964009 tgcgtgaattaagtcacgcatcactgtc-tgtccgcgagttaactcacgcaagttggccggtggttagagctcaagaacacatgttttttg 3964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 278 - 408
Target Start/End: Complemental strand, 1071 - 940
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 377  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1071 cacgtttttttaccctatttatggtagatataacctatgttacaatctctccctataaatacacctctaaacttccccatttcctcacaacatctcacat 972  T
Q  378 tctaactctcttcctcactctc-ccccctatg 408  Q
    ||| |||||| ||||||||||| |||||||||    
T  971 tctcactctcctcctcactctctccccctatg 940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 9e-43; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 231 - 387
Target Start/End: Original strand, 35054679 - 35054835
Alignment:
Q  231 tgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagatataacctatgttacaatctccccc 330  Q
    ||||||| ||||||| |||| ||||  | ||||||||||| |  |  ||||| |||||||  |||||||||||||||||||||||||||||||||| |||    
T  35054679 tgttcaatgcatttttattgtttttacacgtttttgttaagatttaacacgtttttttaccttatttatggtagatataacctatgttacaatctctccc 35054778  T
Q  331 tataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 387  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  35054779 tataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctc 35054835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 106 - 247
Target Start/End: Complemental strand, 23912366 - 23912225
Alignment:
Q  106 gtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaac 205  Q
    |||||||||||  |||||||||||| || ||||||| |||||||| |||||||||||||||||||||||||| |||||||  ||| | |||||| ||| |    
T  23912366 gtgacttaactcacgcaccttataagctctgcgtgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaagttggccggtggttagagc 23912267  T
Q  206 tgaagaactcacgttttttgaaccgtgttcaaagcattttaa 247  Q
    | |||||  ||||||||||| || ||| |||| |||||||||    
T  23912266 tcaagaatacacgttttttggacggtggtcaatgcattttaa 23912225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 9400164 - 9400239
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttcc 353  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  9400164 cacgtttttttagtatatttatggtagatataacctatgttacaatctccccctataaatactcctccaaacttcc 9400239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 319200 - 319314
Alignment:
Q  111 ttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaag 210  Q
    |||||| ||||||||||||| || || |||| |||||||| ||||||||||  | ||||||||||||||||||||  |||  ||||||||||||||||||    
T  319200 ttaacttgcgcaccttataacctctgtgtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaag 319299  T
Q  211 aactcacgttttttg 225  Q
    |||  ||||||||||    
T  319300 aacaaacgttttttg 319314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 13312555 - 13312664
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||||| ||||||||| || || |||||||||||||| |  ||| | | ||||||||    
T  13312555 gcgtgacttaactaacgcaccttataagctctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttggccgatggtcaga 13312654  T
Q  204 actgaagaac 213  Q
    ||||||||||    
T  13312655 actgaagaac 13312664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 17399041 - 17399083
Alignment:
Q  143 ttaagtcacgcaccactggcatgtgcgcgagttaactcacgca 185  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgca 17399083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 9521402 - 9521463
Alignment:
Q  125 ttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    |||||| || ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||    
T  9521402 ttataagctctgcgtgacttaagtcacgcaccactggcatgttcgcgacttaactcccgcag 9521463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 23912133 - 23912082
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| ||||||| | |||||||||||||||||||||||||    
T  23912133 cctataaatacccctccaaacttctcaatttcctcacaccatctcacattct 23912082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 2419849 - 2419805
Alignment:
Q  169 gcgagttaactcacgcagcttgactggtggtcagaactgaagaac 213  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||    
T  2419849 gcgagttaactcacgcaagttggccggtggtcagaactgaagaac 2419805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 24173556 - 24173648
Alignment:
Q  134 ttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttga 226  Q
    |||||| | |||||||||||||||||| | |||  || ||||||||||||||  ||| | ||  ||||||||||||||||  || ||||||||    
T  24173556 ttgcgttagttaagtcacgcaccactgacttgtctgcaagttaactcacgcatgttggccggctgtcagaactgaagaacaaacattttttga 24173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 208 - 404
Target Start/End: Complemental strand, 3460304 - 3460108
Alignment:
Q  208 aagaactcacgttttttgaaccgtgttcaaagcattttaattggttttgtatgtttttgttaaaaaatttcacgtgtttttactatatttatggtagata 307  Q
    |||||| ||||||||||  ||  ||||||| |||||||||||| ||||  | ||||||||||| |  |  ||||| |||| ||  ||||||||||| |||    
T  3460304 aagaacacacgtttttttgactttgttcaatgcattttaattgtttttacacgtttttgttaagatttaacacgttttttgaccctatttatggtaaata 3460205  T
Q  308 taacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||| ||||    
T  3460204 taacatatgttacaatctcccgctataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctcctccccactctctcccc 3460108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 4845587 - 4845478
Alignment:
Q  295 tttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctca 394  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| ||||||    
T  4845587 tttatggtagatataacctacgttacaatctccccctataaatacacctctaaactttcccatttcctcgcaccaactcacattctcactctcctcctca 4845488  T
Q  395 ctctcccccc 404  Q
    ||||| ||||    
T  4845487 ctctctcccc 4845478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 6427235 - 6427373
Alignment:
Q  88 gctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcag 186  Q
    |||||||||| | ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||| | ||||||||||||||||||||     
T  6427235 gctagttaagtcttgcagcgtgacttaactagcgcaccttataaactatgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcac 6427334  T
Q  187 cttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    |||| | |||| | ||| |||||||||  ||||||||||    
T  6427335 cttggccggtgattagagctgaagaacaaacgttttttg 6427373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 403
Target Start/End: Complemental strand, 40014270 - 40014161
Alignment:
Q  293 tatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcct 392  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  40014270 tatttatggtagatataacatatgttacaatc-ccctctataaatacacctctaaactttcccgtttcctcacaccaactcacattctcactctcctcct 40014172  T
Q  393 cactctccccc 403  Q
    ||||| |||||    
T  40014171 cactccccccc 40014161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 7084106 - 7083984
Alignment:
Q  89 ctagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagc 187  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | |||| | |||||||||||||||| ||| |    
T  7084106 ctagttaagtcacgcagcgtgacttaactagcgcaccttataatctatgcgtgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcacc 7084007  T
Q  188 ttgactggtggtcagaactgaag 210  Q
    ||| | |||||||||| ||||||    
T  7084006 ttggccggtggtcagagctgaag 7083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 364
Target Start/End: Original strand, 2599801 - 2600028
Alignment:
Q  137 cgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttgaaccgtgttca 236  Q
    ||||| |||||||||||||||||  |  ||||||| |||||||||||||| ||    ||||||| ||||| |||||| ||||||||||| |  |||||||    
T  2599801 cgtgacttaagtcacgcaccactaaccggtgcgcgtgttaactcacgcaggtttgtcggtggtctgaactcaagaacacacgttttttggattgtgttca 2599900  T
Q  237 aagcattttaattggttttgtatgtttttgttaaaaaattt--cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctata 334  Q
    |   |||||||||||||||| |  ||||| |||  |  |||  ||||| |||| ||||||||| |||||||||| || |||||||||||| |||||||||    
T  2599901 agtaattttaattggttttgcacattttt-ttactatgttttacacgttttttgactatatttgtggtagatattacatatgttacaatc-ccccctata 2599998  T
Q  335 aatacacctctaaacttccccatttcctca 364  Q
    |||||||||| |||||||  ||||||||||    
T  2599999 aatacacctccaaacttcaacatttcctca 2600028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 1173057 - 1172933
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 200  Q
    ||||||||||||||| |||||||||||||| || ||||||| |||||| ||||||||||||| | ||||| |||||||||||||| ||||   | ||||     
T  1173057 gcagcgtgacttaacaagcgcaccttataacctctgcgtgacttaagttacgcaccactggcctatgcgccagttaactcacgcaccttggtcgatggtt 1172958  T
Q  201 agaactgaagaactcacgttttttg 225  Q
    ||| |||||||||  ||||||||||    
T  1172957 agagctgaagaacaaacgttttttg 1172933  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 408
Target Start/End: Complemental strand, 9883851 - 9883720
Alignment:
Q  278 cacgtgtttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacat 377  Q
    ||||| |||| |||| ||||||||||  ||||||||||||||| ||     ||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  9883851 cacgttttttgactacatttatggtacttataacctatgttaccattcatacctataaatacccctccaaacttccccattttctcacaccatctcacat 9883752  T
Q  378 tctaactctcttcctcactctc-ccccctatg 408  Q
    ||| |||||| |||||||| || |||||||||    
T  9883751 tctcactctcctcctcactatctccccctatg 9883720  T

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Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 333 - 404
Target Start/End: Complemental strand, 19401788 - 19401717
Alignment:
Q  333 taaatacacctctaaacttccccatttcctcacaccatctcacattctaactctcttcctcactctcccccc 404  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  19401788 taaatacacctctaaaattctccatttcctcacaccatctcacattctcactctcctcctcactctcccccc 19401717  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 41758829 - 41758709
Alignment:
Q  105 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaa 204  Q
    |||||||||||| |||||  |||||| || ||||||| || |||||||||||| || | | |||||||||||||||| |||  ||| |||||||||||||    
T  41758829 cgtgacttaacttgcgcattttataacctctgcgtgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaa 41758730  T
Q  205 ctgaagaactcacgttttttg 225  Q
    |||||||||  ||||||||||    
T  41758729 ctgaagaacaaacgttttttg 41758709  T

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Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 225
Target Start/End: Original strand, 10532789 - 10532882
Alignment:
Q  132 ctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgttttttg 225  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||  ||| | |||||||||| |||||||||  ||||||||||    
T  10532789 ctttgtgtgagttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaacgttttttg 10532882  T

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Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 28784888 - 28784767
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||| | | ||||||||||| | ||||||| ||||||||| | |||||||| || | |||||||||||||||||  |||   ||||||||||    
T  28784888 gcgtgacttaacaaacacaccttataatttatgcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtcggtggtcaga 28784789  T
Q  204 actgaagaactcacgttttttg 225  Q
    ||||||||||  ||||||||||    
T  28784788 actgaagaacaaacgttttttg 28784767  T

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Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 10399170 - 10399112
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattctaactctc 387  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||    
T  10399170 cctataaatacccctccaaacttccccatttcctcacaccatctcacattctcactctc 10399112  T

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Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 380
Target Start/End: Original strand, 19044036 - 19044132
Alignment:
Q  284 tttttactatatttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||| | |||||| |||  ||||||||||||||  ||  || ||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  19044036 tttttacaacatttattgtatttataacctatgttatcattcccacctataaatacccctccaaacttccccattttctcacaccatctcacattct 19044132  T

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Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 11125901 - 11125823
Alignment:
Q  105 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgc 184  Q
    ||||||||||||  |||||||||||  || ||||||| |||||||| ||| |||||||||||||||||||||||||||||    
T  11125901 cgtgacttaactcacgcaccttatag-ctctgcgtgacttaagtcatgcatcactggcatgtgcgcgagttaactcacgc 11125823  T

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Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 16100850 - 16100930
Alignment:
Q  105 cgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgca 185  Q
    |||| |||||||  ||||||||||||    ||||||| ||||||||||||||| | || ||||||||||||||||||||||    
T  16100850 cgtggcttaactcacgcaccttataagtcctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgca 16100930  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 1082009 - 1081899
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggt 199  Q
    |||||| |||||||||  ||||||| | || || ||||||| |||||||||||||||||| || | ||||||||||||||  ||||  ||||| ||||||    
T  1082009 gcagcgagacttaactcacgcacctcacaagctctgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggt 1081910  T
Q  200 cagaactgaag 210  Q
     | ||||||||    
T  1081909 aaaaactgaag 1081899  T

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Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 225
Target Start/End: Complemental strand, 20202726 - 20202606
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtcaga 203  Q
    |||||||||||||  |||| ||||||  || ||||||| || |||||| |||||||||| || |||||||||||||| ||||| ||| |  |||||| ||    
T  20202726 gcgtgacttaactcacgcatcttatag-ctctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttggccagtggtctga 20202628  T
Q  204 actgaagaactcacgttttttg 225  Q
     || |||||| ||| |||||||    
T  20202627 gctcaagaacacacattttttg 20202606  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 12144012 - 12144071
Alignment:
Q  101 gcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg 160  Q
    |||||| |||||||||  ||||||| | || |||||||||| ||||||||||||||||||    
T  12144012 gcagcgagacttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactg 12144071  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 41758605 - 41758554
Alignment:
Q  329 cctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||||| |||| | ||||||| |||||||||||||||||||| ||||    
T  41758605 cctataaatacccctccatacttccctatttcctcacaccatctcactttct 41758554  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 19043886 - 19043950
Alignment:
Q  136 gcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactggtggtc 200  Q
    |||||| ||||||||| ||||| || | || ||||||||||||||| |||| ||| |||||||||    
T  19043886 gcgtgacttaagtcacacaccattgacttgggcgcgagttaactcatgcaggttggctggtggtc 19043950  T

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Target: scaffold0753 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 3987 - 4088
Alignment:
Q  124 cttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgtttt 222  Q
    |||||||||| ||||||| |||||||||||||||||| || | | ||||||||||||||||||  ||||| ||||||||||||||||||||  |||||||    
T  3987 cttataatctctgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgtttt 4086  T
Q  223 tt 224  Q
    ||    
T  4087 tt 4088  T

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Target: scaffold0861 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 3858 - 3722
Alignment:
Q  90 tagttaag-catgcagcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagct 188  Q
    |||||||| |||||| ||||||||| ||| | |||||||||| |||||  ||| ||||||||| |||||||||| | |||||||||||||||||||| ||    
T  3858 tagttaagtcatgcaacgtgacttagctaacacaccttataagctttgtctgacttaagtcacacaccactggcctatgcgcgagttaactcacgcacct 3759  T
Q  189 tgactggtggtcagaactgaagaactcacgttttttg 225  Q
    || | |||||||| | || ||||||  ||||||||||    
T  3758 tggccggtggtcaaagctaaagaacaaacgttttttg 3722  T

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Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 380
Target Start/End: Complemental strand, 16006 - 15922
Alignment:
Q  296 ttatggtagatataacctatgttacaatctccccctataaatacacctctaaacttccccatttcctcacaccatctcacattct 380  Q
    ||||||||| ||||||||||  ||| ||  || ||||||||||| |||  |||||||| ||||||||||||||||||||||||||    
T  16006 ttatggtagttataacctatactaccattcccacctataaataccccttcaaacttcctcatttcctcacaccatctcacattct 15922  T

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Target: scaffold0223; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 16168 - 16079
Alignment:
Q  137 cgtgaattaagtcacgcaccactggcatgtgcgcgagttaactcacgcagcttgactgg-tggtcagaactgaagaactcacgttttttg 225  Q
    ||||| ||||||||||| ||| |||| |||||||| |||||||||||||| ||| | || |||||||| || || ||| |||||||||||    
T  16168 cgtgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccggttggtcagagctcaaaaacacacgttttttg 16079  T

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Target: scaffold0217 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 25584 - 25688
Alignment:
Q  121 caccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaactcacgcagcttgactggtggtcagaactgaagaactcacgt 219  Q
    ||||||||||||| ||||||| ||||| |||| |||||   || | ||||||||||||||||||||  ||| | ||||||||||||||||||||  ||||    
T  25584 caccttataatctatgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgt 25683  T
Q  220 ttttt 224  Q
    |||||    
T  25684 ttttt 25688  T

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Target: scaffold0051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 20062 - 20138
Alignment:
Q  104 gcgtgacttaactagcgcaccttataatctttgcgtgaattaagtcacgcaccactg-gcatgtgcgcgagttaact 179  Q
    |||||| ||||||  ||||||| | || |||||||||| |||||||||||||||||| || | ||||||||||||||    
T  20062 gcgtgagttaactcacgcacctcacaagctttgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaact 20138  T

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