View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19211_low_3 (Length: 380)
Name: NF19211_low_3
Description: NF19211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19211_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 6466246 - 6466605
Alignment:
| Q |
19 |
gagaagaacagaaggcccctgttagcttatactgttagacatatatatgatacataactgacgttgaatttcaaactgctcatttggacatcagttagcg |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466246 |
gagaaaaacagaaggcccctgttagcttatactgttagacatatatatgatacataactgacgttgaatttcaaactgctcatttggacatcagttagcg |
6466345 |
T |
|
| Q |
119 |
acccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattcttactat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466346 |
acccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattcttactat |
6466445 |
T |
|
| Q |
219 |
ttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaannnnnnnncaatacaatatagattgttatgaactaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6466446 |
ttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaattttttttcaatacaatatagattgttatgaactaa |
6466545 |
T |
|
| Q |
319 |
tgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6466546 |
tgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg |
6466605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University