View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_high_16 (Length: 273)
Name: NF19212_high_16
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 16405146 - 16404882
Alignment:
| Q |
1 |
cctcgaggaggaggatacttccaggtcccaaactaatacgaatgaatttgttaatattacatgagatagacatatattaaccc-------tatgcagatg |
93 |
Q |
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| T |
16405146 |
cctcgaggagaagcacactcccaggtcccaaaccaatatcaatgaatttgttaatattacatgagatagacatatattaaccccaataattatgcagatg |
16405047 |
T |
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| Q |
94 |
attgagtttagtggtatgggctaaactcccacaatatgctaaaccaattgagtttgaattctnnnnnnnnn--gtgtgacacatatgcgaaaacaaaaag |
191 |
Q |
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| T |
16405046 |
attgagtttagtggtatgggctaaactcccacaatatgctaaaccaattgagtttgaatcctaaaaaaaaaatgtgtgacacatatgcgaaaacaaaaag |
16404947 |
T |
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| Q |
192 |
gaatggtcttaaattaacatagctgctgatatggacagcttgatattaaacagtgaccaagttct |
256 |
Q |
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| T |
16404946 |
gaatggtcttaaattaacatagctggtgatatggacaacttgatattaaacagtgaccaagttct |
16404882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 16406022 - 16406061
Alignment:
| Q |
45 |
aatttgttaatattacatgagatagacatatattaacccta |
85 |
Q |
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| T |
16406022 |
aatttgttaatattacatg-gataaacatatattaacccta |
16406061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 5303562 - 5303525
Alignment:
| Q |
48 |
ttgttaatattacatgagatagacatatattaacccta |
85 |
Q |
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| T |
5303562 |
ttgttaatattacatgaggtaaacatatattaacccta |
5303525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 9780357 - 9780321
Alignment:
| Q |
50 |
gttaatattacatgagatagacatatattaaccctat |
86 |
Q |
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|||||||||||||| |||| ||||||||||||||||| |
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| T |
9780357 |
gttaatattacatgggataaacatatattaaccctat |
9780321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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