View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_high_18 (Length: 268)
Name: NF19212_high_18
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 31583327 - 31583094
Alignment:
| Q |
18 |
agcacaaatgagggttgtgagaatctgtttaattgtggaactataaaaccaattggttttcctttctggggagggaatcgaccaaaagagtgtggccacc |
117 |
Q |
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| T |
31583327 |
agcacaaatgaaggttgtgagaatctgtttaattgtggaaatataaaacaaattggttttcctttctggggagaggatcgaccaaaagagtgtggccacc |
31583228 |
T |
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| Q |
118 |
ctttgttgaatctcgcttgtataaacaacatcagctacataacaatcaatgaagtcaagtatcatgttttagaagccaaccctgatgaacatactttgag |
217 |
Q |
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| T |
31583227 |
ctttgttgaatctcaattgcacaaacaataccagctacataacaatcaatgaagtcaagtataatgttttagaagccaaacctgatgaacatactttgag |
31583128 |
T |
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| Q |
218 |
aatcaccaaagaggactatttgcaaggactatgt |
251 |
Q |
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| T |
31583127 |
aatcaccaaagaggactatttgcaaggactatgt |
31583094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 31641933 - 31641700
Alignment:
| Q |
18 |
agcacaaatgagggttgtgagaatctgtttaattgtggaactataaaaccaattggttttcctttctggggagggaatcgaccaaaagagtgtggccacc |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
31641933 |
agcacaaatgaaggttgtgagaatctgtttaattgtggaaatataaaacaaattggttttcctttctggggagaggatcgaccaaaagagtgtggccacc |
31641834 |
T |
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| Q |
118 |
ctttgttgaatctcgcttgtataaacaacatcagctacataacaatcaatgaagtcaagtatcatgttttagaagccaaccctgatgaacatactttgag |
217 |
Q |
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| T |
31641833 |
ctttgttgaatctcaattgcacaaacaataccagctacataacaatcaatgaagtcaagtataatgttttagaagccaaacctgatgaacatactttgag |
31641734 |
T |
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| Q |
218 |
aatcaccaaagaggactatttgcaaggactatgt |
251 |
Q |
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| T |
31641733 |
aatcaccaaagaggactatttgcaaggactatgt |
31641700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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