View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19212_high_22 (Length: 249)

Name: NF19212_high_22
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19212_high_22
NF19212_high_22
[»] chr1 (12 HSPs)
chr1 (16-249)||(47713248-47713481)
chr1 (16-243)||(47745837-47746064)
chr1 (16-242)||(47718049-47718275)
chr1 (16-243)||(47760169-47760396)
chr1 (16-156)||(6512957-6513097)
chr1 (29-148)||(6517364-6517483)
chr1 (29-240)||(6521552-6521763)
chr1 (29-161)||(6507051-6507183)
chr1 (47-243)||(6523572-6523768)
chr1 (16-120)||(6500263-6500367)
chr1 (29-96)||(47777870-47777937)
chr1 (196-246)||(47778037-47778087)
[»] chr5 (4 HSPs)
chr5 (20-235)||(28856511-28856726)
chr5 (20-238)||(28861785-28862003)
chr5 (20-232)||(28831318-28831530)
chr5 (26-132)||(27371748-27371854)
[»] scaffold0341 (2 HSPs)
scaffold0341 (29-161)||(1076-1208)
scaffold0341 (29-161)||(8730-8862)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 47713481 - 47713248
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47713481 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgac 47713382  T
Q  116 aaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713381 aaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaa 47713282  T
Q  216 accaaaaagaagcaattggttggtatgaggacta 249  Q
    ||||||||||||||||||||||||||||||||||    
T  47713281 accaaaaagaagcaattggttggtatgaggacta 47713248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 47746064 - 47745837
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||     
T  47746064 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgat 47745965  T
Q  116 aaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  47745964 aaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaa 47745865  T
Q  216 accaaaaagaagcaattggttggtatga 243  Q
     |||||||||||||||| ||||||||||    
T  47745864 cccaaaaagaagcaattagttggtatga 47745837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 47718275 - 47718049
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    |||||||||||||||||||| ||||||||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| |||    
T  47718275 cacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgac 47718176  T
Q  116 aaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaa 215  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  47718175 aaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaa 47718076  T
Q  216 accaaaaagaagcaattggttggtatg 242  Q
    ||||||||||||| |||||||||||||    
T  47718075 accaaaaagaagcgattggttggtatg 47718049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 47760396 - 47760169
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||| |  ||||||||||||| ||||||||| | ||||||||||||||||| |||    
T  47760396 cacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgac 47760297  T
Q  116 aaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaa 215  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  47760296 aaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaa 47760197  T
Q  216 accaaaaagaagcaattggttggtatga 243  Q
    ||||||||||||||||||||||||||||    
T  47760196 accaaaaagaagcaattggttggtatga 47760169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 6513097 - 6512957
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    ||||||||| || ||||| ||||||||| |||||| ||||||||||||||   | ||||||||||| ||||| |||| |||||||||   ||||||||||    
T  6513097 cacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaataaacaccgac 6512998  T
Q  116 aaagtaaacgccattggactctgcagaggagatgttaaacc 156  Q
    ||||||||||| |||||||| || ||||||||||| |||||    
T  6512997 aaagtaaacgctattggactttgtagaggagatgtcaaacc 6512957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 6517483 - 6517364
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca 128  Q
    ||||| |||||||||||||||| ||||||||||||||   ||||||||||||| ||||| || | ||||||||||  ||||| ||||||||||||||| |    
T  6517483 aaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaa 6517384  T
Q  129 ttggactctgcagaggagat 148  Q
    ||||||| ||||||||||||    
T  6517383 ttggactatgcagaggagat 6517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 6521552 - 6521763
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca 128  Q
    ||||| |||||||||||||||| ||||||||||||||   | ||||||||||| ||||| |||| |||||||||  | ||||| |||||||||||||| |    
T  6521552 aaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcga 6521651  T
Q  129 ttggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagc 228  Q
    ||||||| || ||||||||||| ||||   ||| ||| |  | | | |||||  ||||||  |||||||| ||| ||| ||||| ||||| |||||||||    
T  6521652 ttggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagc 6521751  T
Q  229 aattggttggta 240  Q
    |||||| |||||    
T  6521752 aattggatggta 6521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 6507183 - 6507051
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca 128  Q
    |||||||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |    
T  6507183 aacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgcta 6507084  T
Q  129 ttggactctgcagaggagatgttaaacctgatg 161  Q
    ||||||| || ||||||||||| ||||| ||||    
T  6507083 ttggactgtgtagaggagatgtcaaacccgatg 6507051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 243
Target Start/End: Original strand, 6523572 - 6523768
Alignment:
Q  47 tccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag 146  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||  | ||  |||||||  ||||||||||||| ||||| || |||||||| |    
T  6523572 tccactctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 6523671  T
Q  147 atgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 243  Q
    |||||||  |  | |  || |  ||| | ||||||| ||||||      ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6523672 atgttaagacaaacgagtgtcttagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 6523768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 6500367 - 6500263
Alignment:
Q  16 cacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgac 115  Q
    ||||||| | || ||||||||||| |||||||| | |||||||||||||||  ||||||||||||| ||||||||||| ||  ||||| |||||| ||||    
T  6500367 cacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgac 6500268  T
Q  116 aaagt 120  Q
    |||||    
T  6500267 aaagt 6500263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 47777870 - 47777937
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctc 96  Q
    ||||||||||| |||||||||| ||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  47777870 aacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttctc 47777937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 47778037 - 47778087
Alignment:
Q  196 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgagga 246  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||| |||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggtacgagga 47778087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 28856726 - 28856511
Alignment:
Q  20 tatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaag 119  Q
    |||||| | ||||||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | ||||||    
T  28856726 tatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaag 28856627  T
Q  120 taaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaacca 219  Q
    || ||||||| ||| | ||||||||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||  |||||||||| |    
T  28856626 tatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaa 28856527  T
Q  220 aaaagaagcaattggt 235  Q
    ||||||||||||||||    
T  28856526 aaaagaagcaattggt 28856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 28862003 - 28861785
Alignment:
Q  20 tatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaag 119  Q
    |||||| | ||||||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | ||||||    
T  28862003 tatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaag 28861904  T
Q  120 taaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaacca 219  Q
    || ||||||| ||| | ||||||||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||   ||||| |||||    
T  28861903 tatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaacca 28861804  T
Q  220 aaaagaagcaattggttgg 238  Q
    |||||||||||||||||||    
T  28861803 aaaagaagcaattggttgg 28861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 28831530 - 28831318
Alignment:
Q  20 tatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaag 119  Q
    |||||| | ||||||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| || ||| ||  || | ||||||    
T  28831530 tatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaag 28831431  T
Q  120 taaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaacca 219  Q
    || ||||||| ||| | || |||||||||||||| ||  ||| ||||||| ||  ||| ||  |||||||||||||||| ||| ||  ||||||||||||    
T  28831430 tatacgccataggattatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaacca 28831331  T
Q  220 aaaagaagcaatt 232  Q
    |||||||||||||    
T  28831330 aaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 27371854 - 27371748
Alignment:
Q  26 aacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacg 125  Q
    |||||||| || |||||| ||| || | || ||||| ||||  |||| |||||||| || ||||||||||| ||||||||| || | |||||| |||| |    
T  27371854 aacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcatatggccaacacccagacaaaataaagg 27371755  T
Q  126 ccattgg 132  Q
    |||||||    
T  27371754 ccattgg 27371748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 1208 - 1076
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca 128  Q
    |||||||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |    
T  1208 aacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgcta 1109  T
Q  129 ttggactctgcagaggagatgttaaacctgatg 161  Q
    ||||||| || ||||||||||| ||||| ||||    
T  1108 ttggactgtgtagaggagatgtcaaacccgatg 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 8862 - 8730
Alignment:
Q  29 aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca 128  Q
    |||||||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |    
T  8862 aacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgcta 8763  T
Q  129 ttggactctgcagaggagatgttaaacctgatg 161  Q
    ||||||| || ||||||||||| ||||| ||||    
T  8762 ttggactgtgtagaggagatgtcaaacccgatg 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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