View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_high_23 (Length: 242)
Name: NF19212_high_23
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 31 - 242
Target Start/End: Complemental strand, 915275 - 915064
Alignment:
| Q |
31 |
ataccaactataataggcaatagcaacattatgctggtccaagtggaacttgacttggatacttcacaccaataacatggtcnnnnnnnnnnnnctacag |
130 |
Q |
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| T |
915275 |
ataccaactataattggcaatagcaacattatgctggtccaagtggaacttgacttggatacttcacaccaatagcatggtcaaaaaagaaaaactacag |
915176 |
T |
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| Q |
131 |
ttgaccattaaggctgcgcctattttgattatggatgagaaacgcgcactacacactcatcagtcatcatctaaggcaactcttgactctcaccaaggtt |
230 |
Q |
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| T |
915175 |
ttgacaattaaggctgcgcctattttgattatggatgagaaacgcgcactacacactcaccagtcatcatctaagacaactcttgactctcaccaaggtt |
915076 |
T |
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| Q |
231 |
tagacctatgct |
242 |
Q |
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|||||||||||| |
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| T |
915075 |
tagacctatgct |
915064 |
T |
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