View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_10 (Length: 367)
Name: NF19212_low_10
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 43107336 - 43106992
Alignment:
| Q |
17 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaattcatattcaacatcaaaagataatgtcttattggactaaatgatgt |
116 |
Q |
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| T |
43107336 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaatccatattcaacatcaaaagataatgtcttattggactaaatgatgt |
43107237 |
T |
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| Q |
117 |
acgtgatgaatcaaactagtatt-ttttatgttattatattatatgtgtaacttcttgtgactagggttttttgtttcctattactnnnnnnnnctagag |
215 |
Q |
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| T |
43107236 |
acgtgatgaatcaaactagtatttttttatgttattatgttatatgtgtaacttcttgtgactagggttttttgtttcctattactaaaaaaaactagag |
43107137 |
T |
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| Q |
216 |
gtttttccacctactttattctatttcaattgtgtgtgtttttcttctttcaaatatcaatgttagttgttatttttgtcatatggaggaatgaatatct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43107136 |
gtttttccacctactttattctatttcaattgtgtgcgtttttcttctttcaaatatcaatgttagttgttatttttgttatatggaggaatgaatatct |
43107037 |
T |
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| Q |
316 |
gacttcatcattgtgtgtttgtgtggtgtattgataatgtctctg |
360 |
Q |
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| T |
43107036 |
gactttatcattgtgtgtttgtgtggtgtattgataatgtctctg |
43106992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 38186360 - 38186423
Alignment:
| Q |
17 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaattcatattcaa |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
38186360 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaatccatgttcaa |
38186423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 38211997 - 38211934
Alignment:
| Q |
17 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaattcatattcaa |
80 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
38211997 |
aaattgaagaatgacaataacaaaagaaggaagaagctggtgaaattgatgaatccatgttcaa |
38211934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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