View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_11 (Length: 338)
Name: NF19212_low_11
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 45326579 - 45326677
Alignment:
| Q |
18 |
atggaccctcacagtctatttatactcaactctccatactttcttatctcacaattcttacaaggtcttattaatcggtg-cccgggacactggttaag |
115 |
Q |
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| T |
45326579 |
atggaccctcacactctatttatactcaactctccatactttcttatctcacaattcttacaaggtcttattaatcggtgccccgagacactggttaag |
45326677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 180 - 320
Target Start/End: Original strand, 45326742 - 45326862
Alignment:
| Q |
180 |
gatagaatacacaattttcaagaattaacatttcccttcttataaacctcaatccctttcccttgccgtcgcagccttcacccttgtttactcaacctca |
279 |
Q |
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| T |
45326742 |
gatagaatacacaattttcaagaattaacatttcccttcttataaacctcaatccctt--------------------cacccttgtttactcaacctca |
45326821 |
T |
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| Q |
280 |
ttcttttgcatctcatccaatttaaccctattcctcacaac |
320 |
Q |
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| T |
45326822 |
ttcttttgcatctcatccaatttaaccctattcctcacaac |
45326862 |
T |
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