View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_13 (Length: 333)
Name: NF19212_low_13
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 13083655 - 13083960
Alignment:
| Q |
18 |
aatagcctcttgaatcctttgccataattcttcaatatgtcaactggtgctaaaggagtttggtagaatggttggtccttttttgtgtcaccaaagtgaa |
117 |
Q |
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| T |
13083655 |
aatagcctcttgaatcctttgccataattcttcaatatgtcaactggtgctaaaggagtttggtagaatggttggtccttttttgtgtcaccaaagtgaa |
13083754 |
T |
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| Q |
118 |
ccatgtcaaagtgaaggttatcaaaagtttcataatcttgatatgattcttgttgttggtgatgaaactttaggaactcattttcttgatatgatggatc |
217 |
Q |
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| T |
13083755 |
ccatgtcaaagtgtaggttatcaaaagtttcataatcttgatatgattcttgttgttggtgatgaaactttaggaactcattttcttgatatgatggatc |
13083854 |
T |
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| Q |
218 |
atcttgaaagaaaccaaaattagagtaaagagactcaattccattatagtctcctagatcttctgctacagaaaattgtacatttttcatttcattatgc |
317 |
Q |
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| T |
13083855 |
atcttgaaagaaaccaaaattagagcaaagagactcaattccattatagtctcctagatcttctgctacagaaaattgtacatttttcatttcattatgc |
13083954 |
T |
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| Q |
318 |
cctttg |
323 |
Q |
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|||||| |
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| T |
13083955 |
cctttg |
13083960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 209 - 311
Target Start/End: Original strand, 13088136 - 13088238
Alignment:
| Q |
209 |
tgatggatcatcttgaaagaaaccaaaattagagtaaagagactcaattccattatagtctcctagatcttctgctacagaaaattgtacatttttcatt |
308 |
Q |
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| T |
13088136 |
tgatggatcatcttgaaagaaaccaaaattagagcaaagagactcaattccattgtagtctcctagatcttcttctacagaaaatttaacatttttcatt |
13088235 |
T |
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| Q |
309 |
tca |
311 |
Q |
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||| |
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| T |
13088236 |
tca |
13088238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 13094064 - 13094160
Alignment:
| Q |
209 |
tgatggatcatcttgaaagaaaccaaaattagagtaaagagactcaattccattatagtctcctagatcttctgctacagaaaattgtacatttttc |
305 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
13094064 |
tgatggatcatcttcaaagaaaccaaaattagagcaaagagactcaattccattacagtctcctagatcttctgctacagaaaatttaacatttttc |
13094160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 13087914 - 13087993
Alignment:
| Q |
23 |
cctcttgaatcctttgccataattcttcaatatgtcaactggtgctaaaggagtttggtagaatggttggtccttttttgtgtcac |
108 |
Q |
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| T |
13087914 |
cctcttaaatcctttgccataattcttcaatatctcaattggt------ggagtttggtagaattgttgatctttttttgtgtcac |
13087993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 13093833 - 13093883
Alignment:
| Q |
23 |
cctcttgaatcctttgccataattcttcaatatgtcaactggtgctaaagg |
73 |
Q |
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| T |
13093833 |
cctcttgaatcctttgccgtaattcttcaatatctccactggtgttaaagg |
13093883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 13088030 - 13088083
Alignment:
| Q |
109 |
caaagtgaaccatgtcaaagtgaaggttatcaaaagtttcataatcttgatatg |
162 |
Q |
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|||| ||||||||||||||||| || |||||||||| ||| ||||||||||||| |
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| T |
13088030 |
caaattgaaccatgtcaaagtgtagattatcaaaagattcgtaatcttgatatg |
13088083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 13093958 - 13094011
Alignment:
| Q |
109 |
caaagtgaaccatgtcaaagtgaaggttatcaaaagtttcataatcttgatatg |
162 |
Q |
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| T |
13093958 |
caaagtgaaccatgtcaatgttgaagttatcaaaagcttcataatctagatatg |
13094011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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