View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_14 (Length: 318)
Name: NF19212_low_14
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 34977212 - 34977525
Alignment:
| Q |
1 |
caagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacattacattactaaccaattcagtttcataacagaaagatgtgaaatgta |
100 |
Q |
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| T |
34977212 |
caagcaaaattccagtataatgaactacaaaaagacacaatcaaaatcaacattacattactaaccaattcagtttcataagagaaagatgtgaaatgta |
34977311 |
T |
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| Q |
101 |
atttaaatttgattgattattaattaattaccttcaacttgatctccattatcaggagtttcccacccttcaccttcattaacaagcttcttcttcaaac |
200 |
Q |
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| T |
34977312 |
atttaaatttgattgattatta----attaccttcaacttgatctccattatcaggagtttcccacccttcaccttccttaacaagcttcttcttcaaac |
34977407 |
T |
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| Q |
201 |
cattcttcccaatctccttctcctcaccaactttctgagtcggactcatcacctcctcttcctctggcatttccatgtttcctgctgttggaaactcgaa |
300 |
Q |
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| T |
34977408 |
cattcttcccaatctccttctcctcgccaactttctgagtcggactcatcacctcctcttcctctggcatttccatgtttcctgctgttggaaactcgaa |
34977507 |
T |
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| Q |
301 |
atcctcttccattgatga |
318 |
Q |
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| T |
34977508 |
atcctcttccattgatga |
34977525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 3497496 - 3497573
Alignment:
| Q |
151 |
atcaggagtttcccacccttcaccttcattaacaagcttcttcttcaaaccattcttcccaatctccttctcctcacc |
228 |
Q |
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| T |
3497496 |
atcaggagtatcccaaccttcaccttctttgagaagcttcttcttcaaaccttgctttccgatttccttttcctcacc |
3497573 |
T |
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