View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_25 (Length: 229)
Name: NF19212_low_25
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 42802593 - 42802432
Alignment:
| Q |
1 |
tcattttgagacatttgagataattactacttacatagacatagacagacctaataataaaaaggaaggggaggggagggggtggattaagcatttccaa |
100 |
Q |
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| T |
42802593 |
tcattttgggacatttgagataattactacttacatggacatagacagacctaataataaaaaggaaggggaggggagggggtggattaagcatttccaa |
42802494 |
T |
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| Q |
101 |
aagaggatgggagtgagttactgctgtcttcatttgtgattgaggaggaggatgcatcagta |
162 |
Q |
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| T |
42802493 |
aagaggatgggagtgagttactgctgtcttcatttgtgatcgaggaggaggatgcatcagta |
42802432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 25520430 - 25520303
Alignment:
| Q |
1 |
tcattttgagacatttgagataattactacttaca------tagacatagacagacctaataataaaaagg---------aaggggaggggagggggtgg |
85 |
Q |
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| T |
25520430 |
tcattttaggacatttgagataattactacttacatagaaatagacatagacagacctaataataaaaagggagactccaaaacgaaggggatggggtgg |
25520331 |
T |
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| Q |
86 |
attaagcatttccaaaagaggatgggag |
113 |
Q |
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| T |
25520330 |
attaaacatttccaagagaggatgggag |
25520303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25514944 - 25514990
Alignment:
| Q |
1 |
tcattttgagacatttgagataattactacttacatagacatagaca |
47 |
Q |
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| T |
25514944 |
tcatcttgggacatttgagataattactacttacatagacatagaca |
25514990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 42802413 - 42802379
Alignment:
| Q |
181 |
gcgaagaaattatagaaaacaaccacttttaaact |
215 |
Q |
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| T |
42802413 |
gcgaagaaatcatagaaaacaaccacttttaaact |
42802379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 49035 - 48972
Alignment:
| Q |
72 |
aggggagggggtggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
135 |
Q |
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| T |
49035 |
aggggagggggtgtattaagcatttccaaaagaggatgggagtgacttactgctgtcttcattt |
48972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 25851705 - 25851757
Alignment:
| Q |
83 |
tggattaagcatttccaaaagaggatgggagtgagttactgctgtcttcattt |
135 |
Q |
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| T |
25851705 |
tggattaagcatttccaaaagaggaagggagtgagttactgatgtcttcattt |
25851757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 25851651 - 25851612
Alignment:
| Q |
92 |
catttccaaaagaggatgggagtgagttactgctgtcttc |
131 |
Q |
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| T |
25851651 |
catttccaaaagaggatgggagtgagttactgctgtcttc |
25851612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49135 - 49093
Alignment:
| Q |
1 |
tcattttgagacatttgagataattactacttacatagacata |
43 |
Q |
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| T |
49135 |
tcattttgggacatttaagataattactacttacataaacata |
49093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 25851772 - 25851805
Alignment:
| Q |
129 |
ttcatttgtgattgaggaggaggatgcatcagta |
162 |
Q |
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| T |
25851772 |
ttcatttgtgatttaggaggaggatgcatcagta |
25851805 |
T |
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