View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_26 (Length: 227)
Name: NF19212_low_26
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_26 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42802666 - 42802892
Alignment:
| Q |
1 |
atctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttggtatcactatggcgtgtcgcaatcatggtga |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
42802666 |
atctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttgagtgtaggtttggtatcactatggcgtgtcacaattatggtga |
42802765 |
T |
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| Q |
101 |
tccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaacgcaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42802766 |
tccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatacccatgtaagttaagcaacgcaa |
42802865 |
T |
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| Q |
201 |
gggttcgctttttacctaagatcaaac |
227 |
Q |
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| T |
42802866 |
gggttcgctttttacctaaaatcaaac |
42802892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25514860 - 25514638
Alignment:
| Q |
1 |
atctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt----ttggtatcactatggcgtgtcgcaatcatg |
96 |
Q |
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| T |
25514860 |
atctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgcatggtatcactgtggtgtgtcacaatcatg |
25514761 |
T |
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| Q |
97 |
gtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaac |
196 |
Q |
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| T |
25514760 |
gtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcatacccatgtaagttaagcaac |
25514661 |
T |
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| Q |
197 |
gcaagggttcgctttttacctaa |
219 |
Q |
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| T |
25514660 |
gcaagggttagctttttacctaa |
25514638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 25520514 - 25520737
Alignment:
| Q |
1 |
atctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttg----gtatcactatggcgtgtcgcaatcatg |
96 |
Q |
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| T |
25520514 |
atctaagaatcaaaatgaaaattctatatttttccctccttttaagagattctcttaagtatatgtatgcatggtatcactgtggtgtgtcacaatcatg |
25520613 |
T |
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| Q |
97 |
gtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaa |
195 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
25520614 |
gtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcatacccatgtaagttaagcaa |
25520713 |
T |
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| Q |
196 |
cgcaagggttcgctttttacctaa |
219 |
Q |
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| T |
25520714 |
cgcaagggttcgctttttacctaa |
25520737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
90 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
147 |
Q |
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| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 49316 - 49394
Alignment:
| Q |
141 |
aaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaagcaacgcaagggttcgctttttacctaa |
219 |
Q |
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| T |
49316 |
aaaatcaattaaaatgagtcactgtgattctaacatatccatgtaagttaagcaaccaaaggattctctttttacctaa |
49394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
90 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
129 |
Q |
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| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
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