View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19212_low_3 (Length: 498)

Name: NF19212_low_3
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19212_low_3
NF19212_low_3
[»] chr6 (3 HSPs)
chr6 (13-498)||(16405244-16405729)
chr6 (248-334)||(20349068-20349154)
chr6 (158-198)||(14321792-14321832)
[»] chr5 (7 HSPs)
chr5 (219-334)||(2412725-2412840)
chr5 (219-308)||(35194014-35194103)
chr5 (220-262)||(15564612-15564654)
chr5 (218-288)||(40187702-40187771)
chr5 (161-193)||(12709436-12709468)
chr5 (161-193)||(12770686-12770718)
chr5 (242-322)||(38972920-38973000)
[»] chr3 (5 HSPs)
chr3 (219-334)||(53631879-53631994)
chr3 (247-310)||(44953457-44953520)
chr3 (259-334)||(48305639-48305714)
chr3 (219-313)||(48390836-48390930)
chr3 (158-231)||(14208638-14208711)
[»] chr8 (7 HSPs)
chr8 (227-313)||(8545368-8545454)
chr8 (219-332)||(14186295-14186408)
chr8 (225-313)||(9476032-9476120)
chr8 (250-313)||(27932419-27932482)
chr8 (247-313)||(37960981-37961047)
chr8 (245-334)||(27777196-27777285)
chr8 (253-322)||(39445586-39445655)
[»] chr4 (5 HSPs)
chr4 (102-198)||(38263166-38263262)
chr4 (39-234)||(46057954-46058154)
chr4 (20-118)||(47099490-47099588)
chr4 (247-313)||(32585498-32585564)
chr4 (227-311)||(42907875-42907959)
[»] chr1 (8 HSPs)
chr1 (219-313)||(29871304-29871398)
chr1 (219-334)||(9982888-9983003)
chr1 (219-334)||(42439668-42439783)
chr1 (250-322)||(19572522-19572594)
chr1 (247-334)||(34673280-34673367)
chr1 (237-333)||(16903517-16903613)
chr1 (245-313)||(39219260-39219328)
chr1 (219-311)||(40087484-40087576)
[»] scaffold0036 (1 HSPs)
scaffold0036 (219-334)||(33368-33483)
[»] chr7 (4 HSPs)
chr7 (219-310)||(16866149-16866240)
chr7 (218-280)||(3774048-3774110)
chr7 (220-313)||(27850345-27850438)
chr7 (253-313)||(10072480-10072540)
[»] scaffold0009 (1 HSPs)
scaffold0009 (200-330)||(107393-107523)
[»] scaffold1322 (1 HSPs)
scaffold1322 (158-203)||(1036-1081)
[»] chr2 (5 HSPs)
chr2 (253-334)||(22900804-22900885)
chr2 (159-212)||(25210304-25210357)
chr2 (159-203)||(13531876-13531920)
chr2 (159-203)||(30696851-30696895)
chr2 (48-148)||(43443612-43443712)
[»] scaffold0007 (1 HSPs)
scaffold0007 (270-330)||(197329-197389)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 498
Target Start/End: Complemental strand, 16405729 - 16405244
Alignment:
Q  13 aatatacccactttaacgtttcgagcaatatgctcactttaacatttaattgactgagggtgtgagatgatggagatcgagggctatagtgaaggagaag 112  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16405729 aatatacccactttaacgtttcaagcaatatgcccactttaacatttaattgactgagggtgtgagatgatggagatcgagggctatagtgaaggagaag 16405630  T
Q  113 agagaaaactcgagcaaatgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaggatttgaatttctatttttatagaatgagcaacaaa 212  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||    
T  16405629 agagaaaactcgagtgagtgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaaggtttgaatttctatttttatagaatgagcaataaa 16405530  T
Q  213 gtggcaataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaa 312  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||||    
T  16405529 gtggcaataaagtaattttctaatttcgggacgggtttgagtatgagttcagggtgtgtacatatatctctggtacttgttccgtatccgtgttttgaaa 16405430  T
Q  313 ttcggaaaaattcaaacccatatactagtcaaagcggggaaacccatcaaattgaggttagttcgggtggataaccatggctaagagttttactgccatg 412  Q
    |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16405429 ttcggaaaaactcaaacccatatactagtcaaagtgtggaaacccttcaaattgaggttagttcgggtggataaccatggctaagagttttactgccatg 16405330  T
Q  413 cttataaggtagttagtttgcacactcaaatgaacttaggatccaaaactaacaaatcttcatgttacaaggttgaaatctaaaaa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  16405329 cttataaggtagttagtttgcacactcaaatgaacttaggatccaaaactaatgaatcttcatgttacaaggttgaaatctaaaaa 16405244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 20349068 - 20349154
Alignment:
Q  248 tttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 334  Q
    |||| |||||||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||||  || ||||| ||||| ||||    
T  20349068 tttgggtatgagttcggggtgggtacctatatccccgttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcata 20349154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 14321792 - 14321832
Alignment:
Q  158 cgtgagtgaaatgatttaggatttgaatttctatttttata 198  Q
    |||||||||||||||||| ||||||| ||||||||| ||||    
T  14321792 cgtgagtgaaatgatttaagatttgagtttctatttatata 14321832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 2412840 - 2412725
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    |||||||||||||||   | ||||| ||||||| ||||  ||||||| || |||| |||||  |||||| || | ||||| ||||||||||||||| |||    
T  2412840 ataaagtaattttctgcatacgggacgagtttgggtattggttcaggatgggtacatatatacccgttatttatcccatacccgtgttttgaaattggga 2412741  T
Q  319 aaaattcaaacccata 334  Q
    ||||||||||||||||    
T  2412740 aaaattcaaacccata 2412725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 35194103 - 35194014
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgtttt 308  Q
    ||||||||||||||||  ||||||| | |||||||||||||||  ||||| ||||||||||  |||||||  || ||||| |||||||||    
T  35194103 ataaagtaattttctacattcgggacgggtttgagtatgagtttggggtgggtacctatatacccgttacccgtcccatacccgtgtttt 35194014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 15564612 - 15564654
Alignment:
Q  220 taaagtaattttctaatttcgggatgagtttgagtatgagttc 262  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  15564612 taaagtaattttctacattcgggacgagtttgagtatgagttc 15564654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 40187771 - 40187702
Alignment:
Q  218 aataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttac 288  Q
    |||||| ||||||||||  ||||||| ||||||| |||||||||  |||||  ||||||||||||||||||    
T  40187771 aataaattaattttctatattcgggacgagtttgggtatgagttt-gggtgaatacctatatctccgttac 40187702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 12709436 - 12709468
Alignment:
Q  161 gagtgaaatgatttaggatttgaatttctattt 193  Q
    ||||||||||||||||| |||||||||||||||    
T  12709436 gagtgaaatgatttagggtttgaatttctattt 12709468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 12770686 - 12770718
Alignment:
Q  161 gagtgaaatgatttaggatttgaatttctattt 193  Q
    ||||||||||||||||| |||||||||||||||    
T  12770686 gagtgaaatgatttagggtttgaatttctattt 12770718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 38972920 - 38973000
Alignment:
Q  242 gatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 322  Q
    |||| ||||||||||| |||| ||||| ||||||||||  ||||||| | | ||||| || |||||||||||  |||||||    
T  38972920 gatgggtttgagtatgggttcggggtgggtacctatattcccgttacctatcccatacccatgttttgaaatcgggaaaaa 38973000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 53631879 - 53631994
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    ||||||||||||||||  ||||||| ||||||||||||| |||| ||||| ||||||||||  |||||||  ||  ||||  |||||||| ||||| ||     
T  53631879 ataaagtaattttctagattcgggacgagtttgagtatgggttcggggtgggtacctatatacccgttacccgtctcatacacgtgttttaaaatttggg 53631978  T
Q  319 aaaattcaaacccata 334  Q
    |||| |||||||||||    
T  53631979 aaaactcaaacccata 53631994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 44953520 - 44953457
Alignment:
Q  247 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttga 310  Q
    |||||||||||||||| ||||| ||||||||||  |||||||  || ||||| |||||||||||    
T  44953520 gtttgagtatgagttcggggtgagtacctatatacccgttacccgtcccatacccgtgttttga 44953457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 48305714 - 48305639
Alignment:
Q  259 gttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 334  Q
    |||| ||||| ||||||||||  ||| |||| |||||||| ||||||||||||||| || |||| ||| |||||||    
T  48305714 gttcggggtgggtacctatatacccgatactcgttccatacccgtgttttgaaattggggaaaactcatacccata 48305639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 48390930 - 48390836
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||||||||||| ||  ||||||| | || || ||||| ||||||| || ||||||||||  |||||||  || ||||| ||||||||||||||    
T  48390930 ataaagtaattttttacgttcgggacgggtatgggtatgggttcaggatgggtacctatattcccgttacccgtcccatacccgtgttttgaaat 48390836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 14208638 - 14208711
Alignment:
Q  158 cgtgagtgaaatgatttaggatttgaatttctatttttatagaatgagcaacaaagtggcaataaagtaatttt 231  Q
    ||||||||||||  |||| | ||||| ||||| ||| |||| || ||||||||||| || ||||||||||||||    
T  14208638 cgtgagtgaaattgtttaaggtttgagtttctttttatataaaaggagcaacaaaggggtaataaagtaatttt 14208711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 8545454 - 8545368
Alignment:
Q  227 attttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||||||  || |||| ||||||||||||| |||| ||||| ||| ||||||| |||||||| |||||||| ||||||||||||||    
T  8545454 attttctacatttgggacgagtttgagtatgggttcggggtgggtatctatatccccgttactcgttccatacccgtgttttgaaat 8545368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 14186295 - 14186408
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    ||||| ||||||||||  ||| ||| | ||||| ||||| |||||||||| |||||||||| ||||||||   | ||||| ||||||||||||||   ||    
T  14186295 ataaattaattttctacattcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcgaga 14186394  T
Q  319 aaaattcaaaccca 332  Q
    |||| |||||||||    
T  14186395 aaaactcaaaccca 14186408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 313
Target Start/End: Complemental strand, 9476120 - 9476032
Alignment:
Q  225 taattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||||||||  ||||||||| ||||| ||||| ||||  |||| |||  |||||| ||||||||||| || ||||||| |||||||||    
T  9476120 taattttctacattcgggatgggtttgggtatgggttcgaggtgggtatttatatccccgttacttgtcccgtatccgttttttgaaat 9476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 27932419 - 27932482
Alignment:
Q  250 tgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    |||||||| |||| ||||| ||||||||||  |||||||| || ||||| ||||||||||||||    
T  27932419 tgagtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgaaat 27932482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 37961047 - 37960981
Alignment:
Q  247 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||| |||||||||| ||||||||||||||||  | ||||| ||| ||||| ||||||||| ||||    
T  37961047 gtttgggtatgagttcggggtgtgtacctatatacctgttacctgtcccatacccgtgtttttaaat 37960981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 27777285 - 27777196
Alignment:
Q  245 gagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 334  Q
    ||||||| ||||| |||| ||||| |||||| |||||| ||||| ||| || || | ||||||||||||  ||||||| |||||| ||||    
T  27777285 gagtttgggtatgggttcggggtgggtacctgtatctctgttacctgtcccgtacctgtgttttgaaatcgggaaaaactcaaacacata 27777196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 39445655 - 39445586
Alignment:
Q  253 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 322  Q
    |||||||||| ||||| |||||||||   ||||||| ||| ||||| ||||||||||||||  |||||||    
T  39445655 gtatgagttcggggtgggtacctataaacccgttacctgtcccatacccgtgttttgaaatcgggaaaaa 39445586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 38263262 - 38263166
Alignment:
Q  102 tgaaggagaagagagaaaactcgagcaaatgtcgtttgacagatacactatgatttcgtgagtgaaatgatttaggatttgaatttctatttttata 198  Q
    |||||||||| ||||| |||||||| || |||||| ||| || |||||| ||| | ||||||||||||| |||| | ||||| ||||||||||||||    
T  38263262 tgaaggagaaaagagagaactcgagtaagtgtcgtctgagagttacactctgactacgtgagtgaaatggtttaaggtttgagtttctatttttata 38263166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 46057954 - 46058154
Alignment:
Q  39 aatatgctcactttaacatttaattgactgagggtgtgagatgatggagatcgagggctat---agtgaaggagaagagagaaaactcgagcaaatgtcg 135  Q
    |||||| ||||||||||||||  || || ||| ||||||||||||||||||||| ||||||     ||| | |||||||||| | ||||||  | | ||     
T  46057954 aatatgttcactttaacatttcgttaaccgagagtgtgagatgatggagatcgatggctatgaatatgatgaagaagagagagagctcgagtgagtatca 46058053  T
Q  136 tttgacagatacactatgatttcgtgagtgaaatgatttaggatttgaatttctatttttat--agaatgagcaacaaagtggcaataaagtaattttct 233  Q
    | ||| |||||||||| |  | | ||||||||||||||||   ||||| |||||||||||||  | ||||| ||| ||||||| |||||| |||||||||    
T  46058054 tatgatagatacactacggctgcatgagtgaaatgatttaccgtttgagtttctatttttatacaaaatgaacaataaagtggtaataaattaattttct 46058153  T
Q  234 a 234  Q
    |    
T  46058154 a 46058154  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 47099588 - 47099490
Alignment:
Q  20 ccactttaacgtttcgagcaatatgctcactttaacatttaattgactgagggtgtgagatgatggagatcgagggctatagtgaaggagaagagagaa 118  Q
    ||||| |||| |||| ||| | ||||||| ||| |||||| ||||  ||| |||||||||||||||||||||| | |||| || |||||||||||||||    
T  47099588 ccactctaacatttccagcgacatgctcattttgacatttcattggttgatggtgtgagatgatggagatcgatgactatggttaaggagaagagagaa 47099490  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 32585498 - 32585564
Alignment:
Q  247 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||| ||||| |||||||||| ||||||||||  ||||||| ||| ||||| ||||||||||||||    
T  32585498 gtttgggtatgggttcagggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaat 32585564  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 42907875 - 42907959
Alignment:
Q  227 attttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaa 311  Q
    ||||||||  ||||||| ||||||| ||||| | || ||||| ||||||||||| || ||||| || || |||||||||||||||    
T  42907875 attttctacattcgggacgagtttgggtatgggctcggggtgggtacctatatccccattactcgtcccgtatccgtgttttgaa 42907959  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 29871398 - 29871304
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||| ||||||||||  ||||||| | ||||| |||||||||||||||| ||||||||||  | ||||| ||| ||||| || |||||||||||    
T  29871398 ataaaataattttctacattcgggacgggtttgggtatgagttcagggtgggtacctatataccagttacctgtcccatacccatgttttgaaat 29871304  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 9983003 - 9982888
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    |||||||||||||||   ||||||||| ||||| ||||| |||| ||||| ||||||||||   ||||||   | ||||  ||||||||||||||| ||     
T  9983003 ataaagtaattttctgcattcgggatgggtttgggtatgggttcggggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattgggg 9982904  T
Q  319 aaaattcaaacccata 334  Q
    ||||||||||| ||||    
T  9982903 aaaattcaaactcata 9982888  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 42439783 - 42439668
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    ||||||||||||| ||  || ||||||||||||  |||| |||| ||||| ||||||||||  |||||||| || ||||| || |||||||| ||  | |    
T  42439783 ataaagtaattttttacatttgggatgagtttggatatgggttcggggtgggtacctatatacccgttactcgtcccatacccatgttttgagatcggaa 42439684  T
Q  319 aaaattcaaacccata 334  Q
    |||||||| |||||||    
T  42439683 aaaattcatacccata 42439668  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 19572594 - 19572522
Alignment:
Q  250 tgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaa 322  Q
    |||||||| |||| ||||| ||||||||||  ||||||| ||| ||||| ||||||||||||||  |||||||    
T  19572594 tgagtatgggttcggggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcgggaaaaa 19572522  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 34673367 - 34673280
Alignment:
Q  247 gtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 334  Q
    ||||| ||||| |||| ||||| ||||||||||  |||||||  ||  |||| ||||||||||||||| |||||||  ||||||||||    
T  34673367 gtttgggtatgggttcggggtgggtacctatatacccgttaccagtctcatacccgtgttttgaaattgggaaaaacccaaacccata 34673280  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 16903517 - 16903613
Alignment:
Q  237 ttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccat 333  Q
    ||||||| | ||||| |||||||||| ||||| ||||||||||| || |||| | | || ||  |||||||| ||||| ||||||||  ||||||||    
T  16903517 ttcgggacgggtttgggtatgagttcggggtgggtacctatatccccattacctatcccgtactcgtgttttaaaattgggaaaaatctaaacccat 16903613  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 39219260 - 39219328
Alignment:
Q  245 gagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||||| ||||| |||| ||||| |||| | |||| |||||||||||||| || ||||||||| ||||    
T  39219260 gagtttgggtatgggttcggggtgggtacatgtatccccgttacttgttccgtacccgtgttttaaaat 39219328  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 40087576 - 40087484
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaa 311  Q
    ||||||||||||| ||  || |||| | || ||||||||||||| ||||| ||||||||||  ||||||||  | ||||| | ||||||||||    
T  40087576 ataaagtaattttttacatttgggacgggtatgagtatgagttcggggtgggtacctatattcccgttactcatcccatacctgtgttttgaa 40087484  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 33368 - 33483
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcgga 318  Q
    |||||||| ||||||   ||||||| ||||||| ||||| |||| ||||| |||| |||||  |||||||  || ||||| ||||||||||||||  ||     
T  33368 ataaagtagttttctgcattcgggacgagtttgggtatgggttcggggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcgggg 33467  T
Q  319 aaaattcaaacccata 334  Q
    ||||  ||||||||||    
T  33468 aaaacccaaacccata 33483  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 16866149 - 16866240
Alignment:
Q  219 ataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttga 310  Q
    ||||||||||||| ||  || |||| | ||||| ||||| |||| ||||| ||||||||||  |||||||| || ||||| |||||||||||    
T  16866149 ataaagtaattttttacatttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttga 16866240  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 3774048 - 3774110
Alignment:
Q  218 aataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatc 280  Q
    |||||| | ||||||||| ||||||| |  |||||||||| |||||||||| |||||||||||    
T  3774048 aataaattgattttctaaattcgggacggatttgagtatgggttcagggtgggtacctatatc 3774110  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 27850438 - 27850345
Alignment:
Q  220 taaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    |||||||||||||||  ||||||| | ||||| ||||| |||| || || |||||||||   |||||||  || ||||| ||||||||||||||    
T  27850438 taaagtaattttctacattcgggacgggtttgggtatgggttcgggatgggtacctatacacccgttacccgtcccatacccgtgttttgaaat 27850345  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 10072480 - 10072540
Alignment:
Q  253 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaat 313  Q
    ||||| |||| ||||| ||||||||||  |||||||  |||||||| ||||||||||||||    
T  10072480 gtatgggttcggggtgggtacctatatacccgttacccgttccatacccgtgttttgaaat 10072540  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 330
Target Start/End: Complemental strand, 107523 - 107393
Alignment:
Q  200 aatgagcaacaaagtggcaataaagtaattttctaatttcgggatgagtttgagtatgagttcagggtgtgtacctatatctccgttacttgttccatat 299  Q
    ||||||||| ||  ||| ||||||||||||||| |  ||||| | |||||||| ||||||||| ||||| |||| |||||||  | |||  || |||||     
T  107523 aatgagcaataatatggtaataaagtaattttcaacattcggaacgagtttgaatatgagttcggggtgggtacttatatctatgctacccgtcccatac 107424  T
Q  300 ccgtgttttgaaattcggaaaaattcaaacc 330  Q
    | ||||||||||||   |||||| |||||||    
T  107423 ctgtgttttgaaatcgagaaaaactcaaacc 107393  T

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Target: scaffold1322 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 1036 - 1081
Alignment:
Q  158 cgtgagtgaaatgatttaggatttgaatttctatttttatagaatg 203  Q
    |||||||||||||||||| ||||||| ||||||||| |||| ||||    
T  1036 cgtgagtgaaatgatttaagatttgagtttctatttatataaaatg 1081  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 22900804 - 22900885
Alignment:
Q  253 gtatgagttcagggtgtgtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacccata 334  Q
    |||||||||| ||||| |||  |||| | |||||||| || ||||| ||||||||||||||  |||||||  ||||||||||    
T  22900804 gtatgagttcggggtgggtatatataaccccgttactcgtcccatacccgtgttttgaaatcgggaaaaacccaaacccata 22900885  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 25210304 - 25210357
Alignment:
Q  159 gtgagtgaaatgatttaggatttgaatttctatttttatagaatgagcaacaaa 212  Q
    ||||||||||||||||||| ||||| ||||||||| |||| |||| | ||||||    
T  25210304 gtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaa 25210357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 13531876 - 13531920
Alignment:
Q  159 gtgagtgaaatgatttaggatttgaatttctatttttatagaatg 203  Q
    ||||||||||||||||||| ||||| ||||||||| |||| ||||    
T  13531876 gtgagtgaaatgatttagggtttgagtttctatttatataaaatg 13531920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 30696851 - 30696895
Alignment:
Q  159 gtgagtgaaatgatttaggatttgaatttctatttttatagaatg 203  Q
    |||||||| |||||||||| ||||||||||||||| |||| ||||    
T  30696851 gtgagtgacatgatttagggtttgaatttctatttatataaaatg 30696895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 43443712 - 43443612
Alignment:
Q  48 actttaacatttaattgactgagggtgtgagatgatggagatcgagggctatagtgaaggagaagagagaaaactcgagcaaatgtcgtttgacagatac 147  Q
    ||||||||||||  || || || | |||||||||||||||||||| |  ||   |||| ||||||||||| ||||| ||| |  ||||||||||||||||    
T  43443712 actttaacatttcgttaaccgatgatgtgagatgatggagatcgatgtgtacgatgaacgagaagagagagaactcaagcgagggtcgtttgacagatac 43443613  T
Q  148 a 148  Q
    |    
T  43443612 a 43443612  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 197389 - 197329
Alignment:
Q  270 gtacctatatctccgttacttgttccatatccgtgttttgaaattcggaaaaattcaaacc 330  Q
    ||||||||||  | |||||||||  |||||||||||||||||||  ||||||| |||||||    
T  197389 gtacctatatgcctgttacttgtctcatatccgtgttttgaaatagggaaaaactcaaacc 197329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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