View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19212_low_4 (Length: 494)

Name: NF19212_low_4
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19212_low_4
NF19212_low_4
[»] chr1 (9 HSPs)
chr1 (21-494)||(246236-246709)
chr1 (22-279)||(251895-252146)
chr1 (356-494)||(234916-235055)
chr1 (412-494)||(231334-231416)
chr1 (411-488)||(8814654-8814731)
chr1 (52-186)||(8814781-8814913)
chr1 (41-174)||(231052-231190)
chr1 (411-494)||(251666-251751)
chr1 (239-271)||(234781-234813)
[»] chr3 (12 HSPs)
chr3 (65-211)||(9340029-9340166)
chr3 (55-221)||(9495475-9495640)
chr3 (404-483)||(9626768-9626847)
chr3 (426-482)||(9357141-9357197)
chr3 (432-488)||(9495115-9495171)
chr3 (440-482)||(9402160-9402202)
chr3 (440-482)||(9420399-9420441)
chr3 (426-478)||(9347299-9347351)
chr3 (144-197)||(9335294-9335345)
chr3 (125-174)||(9401917-9401966)
chr3 (125-174)||(9432410-9432459)
chr3 (55-131)||(9627160-9627236)
[»] chr6 (8 HSPs)
chr6 (418-478)||(7046587-7046647)
chr6 (134-212)||(7046438-7046514)
chr6 (129-197)||(9159841-9159907)
chr6 (148-241)||(213647-213738)
chr6 (128-174)||(7040933-7040979)
chr6 (136-197)||(9170528-9170587)
chr6 (418-483)||(213366-213431)
chr6 (239-279)||(213557-213597)
[»] chr7 (3 HSPs)
chr7 (422-483)||(3650603-3650664)
chr7 (449-488)||(450419-450458)
chr7 (422-483)||(3706873-3706934)


Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 21 - 494
Target Start/End: Original strand, 246236 - 246709
Alignment:
Q  21 aaagaaactgttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  246236 aaagaaactgttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggttcattgca 246335  T
Q  121 aagtatatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatg 220  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||    
T  246336 aagcatatagtccgcaaaaggaacaacaaaagaagataatcaaacccatcaacacatggttaaatctagtttagaaaatccataatgataacttgccatg 246435  T
Q  221 gtgatgtctttaatatattcaaatagatccagatttcaataaaagctaattgcatatgagnnnnnnnnnnttaaatgaagtgaaatatacttatttacag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  246436 gtgatgtctttaatatattcaaatagatccagatttcaataaaagctaattgcatatgagaaaaagaaaattaaatgaagtgaaatatacttatttacag 246535  T
Q  321 aaaacatattagttaggaaaatccgtagtcaatgtaacattacaatttttcttgttctacaagtactaggggaaatgtttactcaatcttacaacaaaaa 420  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  246536 aaaacatatcagttaggaaaatccgtagtcaatgtaacattacaatttttcttgttctacaagtactagttgaaatgtttactcaatcttacaacaaaaa 246635  T
Q  421 ttaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaatt 494  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  246636 ttaagctcaataaagctatatcaaaatcacattagaaacctttcaatgcaagataatatactctgttactaatt 246709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 22 - 279
Target Start/End: Complemental strand, 252146 - 251895
Alignment:
Q  22 aagaaactgttagaatgtgtatccggcaaccccaa-ttccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgca 120  Q
    ||||||||||||||| |  ||||||||||||| || ||||||  ||||||||| ||||||||| |||||||||||||||||||||||||||||| || ||    
T  252146 aagaaactgttagaacgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttca 252047  T
Q  121 aagtatatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatg 220  Q
    ||| |||||||| ||||||||||||| ||||||||||||||||||       | ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  252046 aagcatatagtctgcaaaaggaacaacaaaagaagataatcaaac-------ctcattgttaaatctggttttgaaaattcataatgataacttgccatg 251954  T
Q  221 gtgatgtctttaatatattcaaatagatccagatttcaataaaagctaattgcatatga 279  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||    
T  251953 gtgatgtcttgcatatattcaaatagatccagatttcagtaaaagctaattgcatatga 251895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 356 - 494
Target Start/End: Original strand, 234916 - 235055
Alignment:
Q  356 aacattacaatttttcttgttctacaagtactaggggaaatgtttactcaa-tcttacaacaaaaattaagcacaataaagctatatcaaaatcacatta 454  Q
    |||||| ||||||||||| |||||| | ||||||  || | ||||| || | ||| ||||||||||  |||||| ||||||||| |||| ||||| ||||    
T  234916 aacattgcaatttttctttttctactaatactagtcgacaagtttattcgactctgacaacaaaaacaaagcacgataaagctacatcacaatcagatta 235015  T
Q  455 gaaatctttcaatgcaagataacatactctgttactaatt 494  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  235016 gaaacctttcaatgcaagataacatactctgttactaatt 235055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 412 - 494
Target Start/End: Original strand, 231334 - 231416
Alignment:
Q  412 caacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgttactaatt 494  Q
    |||||||||||||| ||||||||||||||||| | | |||||||||| ||||||||||||||||||||||| |||||||||||    
T  231334 caacaaaaattaagtacaataaagctatatcacagttacattagaaacctttcaatgcaagataacatactttgttactaatt 231416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 8814731 - 8814654
Alignment:
Q  411 acaacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgtta 488  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  8814731 acaacaaaaactaagcacaatgaagctatatcacaatcacattagaaacctttcaatgcaagataacatacactgtta 8814654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 8814913 - 8814781
Alignment:
Q  52 cccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaataaaa 151  Q
    ||||||||||   ||||||||| ||||||||| ||||||||||||||||||| | | | ||||||  ||||| |||||| | |||| |||||||||||||    
T  8814913 cccaattccatctcattttccagcatcttttcatatgaatatgtaattaggacttaagagtttgtcacaaagcatatagcctgcaagaggaacaataaaa 8814814  T
Q  152 gaagataatcaaacccatcaacacattgttaaatc 186  Q
    |||| ||| |||||||||||  |||||||||||||    
T  8814813 gaagctaaacaaacccatca--acattgttaaatc 8814781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 231052 - 231190
Alignment:
Q  41 tatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaag 140  Q
    |||||||||| || ||||||||  | ||||||| ||||||||| ||||||| ||||||||||||| ||| |   ||||||||  |||||||| |||||||    
T  231052 tatccggcaaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaattaggatttaggagaccgttgcaaaacatatagtctgcaaaag 231151  T
Q  141 gaac-----aataaaagaagataatcaaacccatcaaca 174  Q
    ||||     ||||||||||||||||||||||||||||||    
T  231152 gaacaataaaataaaagaagataatcaaacccatcaaca 231190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 251751 - 251666
Alignment:
Q  411 acaacaaaaattaagcacaataaagctatatc--aaaatcacattagaaatctttcaatgcaagataacatactctgttactaatt 494  Q
    ||||||||||  |||||||||||||||||||   | ||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  251751 acaacaaaaacaaagcacaataaagctatatatgacaatgacattagaaacctttcaatgcaagataacatactttgttactaatt 251666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 234781 - 234813
Alignment:
Q  239 tcaaatagatccagatttcaataaaagctaatt 271  Q
    |||||||||||||||||||| ||||||||||||    
T  234781 tcaaatagatccagatttcagtaaaagctaatt 234813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 9340029 - 9340166
Alignment:
Q  65 cattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaa 164  Q
    ||||||||| ||||||||  |||||||||| ||||||||       ||||||||  ||  |||||||| ||||||| |||||| ||||||||||||||||    
T  9340029 cattttccagcatcttttgatatgaatatgcaattagga-------gtttgttggtaaacatatagtctgcaaaagtaacaatgaaagaagataatcaaa 9340121  T
Q  165 cccatcaacacattgttaaatctagtttagaaaattcataatgataa 211  Q
    |||| ||  ||||||||| |||||||||||||| |||||||| ||||    
T  9340122 cccaaca--acattgttacatctagtttagaaagttcataataataa 9340166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 9495640 - 9495475
Alignment:
Q  55 aattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaa-taaaaga 153  Q
    ||||||||  |||||| || ||||| ||| |||||| ||||||| | || | ||| ||||||||  ||  |||||||| ||||||||||||| |||||||    
T  9495640 aattccacctcattttgcagcatctcttcatatgaacatgtaatcacgaattaggagtttgttggtaaacatatagtctgcaaaaggaacaaataaaaga 9495541  T
Q  154 agataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatgg 221  Q
    |||||| |||||  | |||||  |||||||||||| || ||||| |||||||| ||||||||||||||    
T  9495540 agataaacaaacaaaccaaca--ttgttaaatctatttcagaaacttcataataataacttgtcatgg 9495475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 404 - 483
Target Start/End: Complemental strand, 9626847 - 9626768
Alignment:
Q  404 caatcttacaacaaaaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 483  Q
    |||||| |||||| |||||||||||||||| || |||| | |||||||||||||| ||||||||| | ||||||||||||    
T  9626847 caatctaacaacataaattaagcacaataatgcaatatgacaatcacattagaaacctttcaatgtaggataacatactc 9626768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 482
Target Start/End: Original strand, 9357141 - 9357197
Alignment:
Q  426 cacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatact 482  Q
    ||||| ||||| |||||| ||||||||||||||| | ||||||||||||||||||||    
T  9357141 cacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataacatact 9357197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 488
Target Start/End: Complemental strand, 9495171 - 9495115
Alignment:
Q  432 aaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactctgtta 488  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||||||||| ||||    
T  9495171 aaagctatatcacaatcacattaaaaagcttttaatgcaagataacatactcagtta 9495115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 9402160 - 9402202
Alignment:
Q  440 atcaaaatcacattagaaatctttcaatgcaagataacatact 482  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  9402160 atcaaaatcacattagaaatttctcaatgcaagataacatact 9402202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 482
Target Start/End: Original strand, 9420399 - 9420441
Alignment:
Q  440 atcaaaatcacattagaaatctttcaatgcaagataacatact 482  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  9420399 atcaaaatcacattagaaatttctcaatgcaagataacatact 9420441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 9347299 - 9347351
Alignment:
Q  426 cacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataaca 478  Q
    ||||| ||||| |||||| ||||||||||||||| | ||||||||||||||||    
T  9347299 cacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataaca 9347351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 9335294 - 9335345
Alignment:
Q  144 caataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 197  Q
    |||||||||||||||||||||| |||||  ||| ||||| ||||||||||||||    
T  9335294 caataaaagaagataatcaaactcatca--acaatgttacatctagtttagaaa 9335345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 9401917 - 9401966
Alignment:
Q  125 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 174  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9401917 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 9432410 - 9432459
Alignment:
Q  125 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 174  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9432410 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9432459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 9627236 - 9627160
Alignment:
Q  55 aattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagt 131  Q
    ||||||||| ||||||| | ||| ||||| || |||||||||||||||| | ||| ||||||||  || ||||||||    
T  9627236 aattccacttcattttctagcatattttcatacgaatatgtaattaggaattaggagtttgttgataaatatatagt 9627160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 7046587 - 7046647
Alignment:
Q  418 aaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataaca 478  Q
    |||||||||| | |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  7046587 aaattaagcatagtaaagctatatcactatcacattagaaacctttcaatgcaagataaca 7046647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 7046438 - 7046514
Alignment:
Q  134 gcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataac 212  Q
    ||||||| |||||||||||||||||||||| |||| ||  ||||||| | |||||||||||||| |||||||| |||||    
T  7046438 gcaaaagtaacaataaaagaagataatcaagcccagca--acattgtcatatctagtttagaaacttcataataataac 7046514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 9159907 - 9159841
Alignment:
Q  129 agtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 197  Q
    |||| ||||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9159907 agtctgcaaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9159841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 213738 - 213647
Alignment:
Q  148 aaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatggtgatgtctttaatatattca 241  Q
    |||||||||||  |||| |||||||||  ||||||  |  |||||||||| |||||||| ||||||||||||||||||||| |  |||||||||    
T  213738 aaaagaagatatccaaaaccatcaaca--ttgttaccttcagtttagaaacttcataataataacttgtcatggtgatgtcctgcatatattca 213647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 7040933 - 7040979
Alignment:
Q  128 tagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 174  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  7040933 tagtctgcaaaagtaacaataaaagaagataatcaatcccatcaaca 7040979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 9170528 - 9170587
Alignment:
Q  136 aaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 197  Q
    ||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9170528 aaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 213431 - 213366
Alignment:
Q  418 aaattaagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 483  Q
    ||||||||||  |||||| ||||||| ||| |||| ||| | ||||||||||||||||||||||||    
T  213431 aaattaagcaagataaagatatatcacaataacatgagagacctttcaatgcaagataacatactc 213366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 213597 - 213557
Alignment:
Q  239 tcaaatagatccagatttcaataaaagctaattgcatatga 279  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  213597 tcaaatagatccagatttcagtaaaagctagttgcatatga 213557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 3650603 - 3650664
Alignment:
Q  422 taagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 483  Q
    |||||||||||||| |||| ||  ||||||||||||   |||||||||||||||||||||||    
T  3650603 taagcacaataaagttataccacgatcacattagaatattttcaatgcaagataacatactc 3650664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 488
Target Start/End: Complemental strand, 450458 - 450419
Alignment:
Q  449 acattagaaatctttcaatgcaagataacatactctgtta 488  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  450458 acattagaaacctttcaatgcaagagaacatactctgtta 450419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 3706934 - 3706873
Alignment:
Q  422 taagcacaataaagctatatcaaaatcacattagaaatctttcaatgcaagataacatactc 483  Q
    |||||||| ||||| |||| ||  ||||||||||||   |||||||||||||||||||||||    
T  3706934 taagcacagtaaagttataccacgatcacattagaatattttcaatgcaagataacatactc 3706873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University