View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_5 (Length: 489)
Name: NF19212_low_5
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 34977229 - 34976736
Alignment:
| Q |
13 |
atactggaattttgcttgatggaaccaaatttgactcgagccgtgataggggtaccactttcaaatttaagcttggtcaaggtaatatttaactttctgt |
112 |
Q |
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| T |
34977229 |
atactggaattttgcttgatggaaccaaatttgactcgagccgtgataggggtaccactttcaagtttaagcttggtcaaggtaatatttaactttctgt |
34977130 |
T |
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| Q |
113 |
tttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatgtttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgatagt |
212 |
Q |
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| T |
34977129 |
tttcctcttgtaaattttgtcgaggtataaaatgatgaatattcaatgtttttaatcatgttgctgtgtatgaggaggaaatgaactatacaatgatagt |
34977030 |
T |
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| Q |
213 |
atcatattaaaatagatcttttatttacacaaatgtgatttttgta-----------------tatcgtacaaacactttagattgaagatatgtctggg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
34977029 |
atcatattaaaatagatcttttatttacacaaatgtgatttttgtatattgtattggttaagttatcgtacagacactttagattgaagatatgtctggg |
34976930 |
T |
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| Q |
296 |
tgattgatatgtgtgttacaattattttcattgtcagtgttttatcgtgtccaacatccgtgtctctgtttcataaaactttatccaaagactgagatct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
34976929 |
tgattgatatgtgtgttacaattattttcattgtcagtgttttatcgtttccaacatccgtgtctctgtttcataaaacttcatccgaagactgagatct |
34976830 |
T |
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| Q |
396 |
cttaggactttacttcatcaatgaactgcagttaatttgttattgtttttgtcaatgaagggcaagtgatcaaagggtgggatgaaggtatcaa |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976829 |
cttaggactttacttcatcaatgaactgcagttaatttgttattgtttttgtcaatgaagggcaagtgatcaaagggtgggatgaaggtatcaa |
34976736 |
T |
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