View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_7 (Length: 433)
Name: NF19212_low_7
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 68 - 306
Target Start/End: Original strand, 915560 - 915809
Alignment:
| Q |
68 |
atcaaacgtcacttttgacttacgaagtacgttagcttcttttacatttttgaaaaataaaaacagatatgcagtattttgtatccatgtgaatcatttg |
167 |
Q |
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| T |
915560 |
atcaaacgtcacttttgacttacgaagtacgttagcttcttttacatttttgaaaaataaaaacagatatgcagtattttgtatccatgtgaatcatttg |
915659 |
T |
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| Q |
168 |
tagagggtactgttg-taagataac----------aagtagaagataacccaaaattagaagtgtttgtgtgttgaatgactaagttttgagagagaatg |
256 |
Q |
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| T |
915660 |
gagagggtactgttgttaagataacatggaaaacaaagtagaagataacccaaaatcagaagtgtttgtgtgttgaatgactaagttttgagagagaatg |
915759 |
T |
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| Q |
257 |
gttattgatcattttcatgcagaataaaattgggattcacttctgttgcc |
306 |
Q |
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| T |
915760 |
gttattgatcattttcatgcagaatataattgggattcacttctgttgcc |
915809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 915460 - 915390
Alignment:
| Q |
1 |
ctcccactaaacaagttggatcaatattttactaagagggtcaacataaatcaataaccaaaattatatca |
71 |
Q |
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| T |
915460 |
ctcccactaaacaagttggatcaatattttactaagagggtcaacataaatcaataaccaaaattatatca |
915390 |
T |
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