View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19212_low_8 (Length: 393)

Name: NF19212_low_8
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19212_low_8
NF19212_low_8
[»] chr1 (1 HSPs)
chr1 (16-392)||(52174670-52175046)
[»] chr7 (12 HSPs)
chr7 (16-205)||(31585087-31585276)
chr7 (16-225)||(31607917-31608126)
chr7 (16-225)||(31617930-31618139)
chr7 (22-169)||(31604382-31604529)
chr7 (18-210)||(31614216-31614408)
chr7 (16-196)||(31575686-31575866)
chr7 (16-198)||(31594744-31594926)
chr7 (16-115)||(31532166-31532265)
chr7 (16-115)||(31573193-31573292)
chr7 (16-123)||(31439376-31439483)
chr7 (18-112)||(33305507-33305601)
chr7 (16-132)||(31540775-31540891)
[»] scaffold0394 (1 HSPs)
scaffold0394 (18-115)||(1712-1809)
[»] chr4 (1 HSPs)
chr4 (18-115)||(15063725-15063822)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 52174670 - 52175046
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174670 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 52174769  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174770 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttc 52174869  T
Q  216 tttctataaaatgttagtgccctcaaggtggcggaggtggttgattctgtcaagaacctatcttggaaattgtttttaggaaaaacagtgggtctacctt 315  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52174870 tttctataaaatgttaatgccctcaaggtggcggaggtggttgattctgtcaagaacctatcttggaaattgtttttaagaaaaacagtgggtctacctt 52174969  T
Q  316 gtcttttctatgaaaagttttatcaccctctagattgtatgttaagatagattcgttgatttgttcatttcagtcga 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  52174970 gtcttttctatgaaaagttttatcaccctctagattgtatgttaagatagattcgttgatttgttggtttcagtcga 52175046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 31585276 - 31585087
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  31585276 tatggtgcattcaaacgaatccatcggacagaccaccgatgaataaagtaatagaaatgttgcaaggaccactttcatcagtgccatatcctccaaagcc 31585177  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaa 205  Q
    |||||||| || || ||||| ||||||| || |||||||| | || |||||| || | | ||||||||| ||||| |||||||| |||||    
T  31585176 cgtcttattttctcttgaaaggccaccagtacaaatgtcacatatatcttcaaccgactgggatgagacaaattcaattacaatatcaaa 31585087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 31608126 - 31607917
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||| |||| || || ||||||||| ||||||||||||||||    
T  31608126 tatggtgcattcaaacgaatccatcagatagaccaccaatgaataaagtaatagaaatgttgcaaggaccgctgtcatcagtgtcatatcctccaaagcc 31608027  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttc 215  Q
     ||||||| || ||| |||| |||||||||| || ||||| | |||||||||||  ||||  ||||||| |||||  ||||| |||||||||||  ||||    
T  31608026 ggtcttattttctccggaaaggccaccactacaattgtcatatatgtcttcatctgatttatatgagacaaattcagttacagtgtcaaaataactgttc 31607927  T
Q  216 tttctataaa 225  Q
    | ||||||||    
T  31607926 tatctataaa 31607917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 31618139 - 31617930
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||  ||||||||||||||||    
T  31618139 tatggtgcattcaaactaaaccatcagatagaccaccgatgaataaagtaatagaaatgttgcaaggaccactttcatcggtatcatatcctccaaagcc 31618040  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttc 215  Q
     ||||||| ||  || |||| ||||  |||| || ||||||| |||||||||||| ||||| | ||||| |||||  ||||| | |||||||||| |||     
T  31618039 tgtcttatattcacccgaaaggccagaactacaagtgtcagatatgtcttcatccgatttgtacgagacaaattcagttacagtatcaaaataattgtta 31617940  T
Q  216 tttctataaa 225  Q
    ||||||||||    
T  31617939 tttctataaa 31617930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 31604529 - 31604382
Alignment:
Q  22 gcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccgtctt 121  Q
    |||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||| |||| ||||||||| || |  ||||||||||||||||||||||    
T  31604529 gcattcaaactaaactatcagatagaccaccgatgaataaagtaatagaaatgttgcaaggaccactttcaacaatatcatatcctccaaagcccgtctt 31604430  T
Q  122 atgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatc 169  Q
    || ||  ||||||| ||||| | || || |||||||||||||||||||    
T  31604429 atattcacctgaaaggccacaattacaagtgtcagacatgtcttcatc 31604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 31614408 - 31614216
Alignment:
Q  18 tggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcccg 117  Q
    |||||||||||||| |||||||  || ||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||| |||     
T  31614408 tggtgcattcaaactaaaccattagacagaccaccgatgaataaagtaatagaaatgttgcaaggaccactttcatcggtgtcatatcctccaaatccct 31614309  T
Q  118 tcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataat 210  Q
    |||||  ||  ||  ||| |||||||||| || ||| ||| || ||||||||| ||||| | ||||| ||||| |||||| | ||||||||||    
T  31614308 tcttacattcaccataaaggccaccactacaagtgttagatatttcttcatccgatttgtacgagacaaattcaattacagtatcaaaataat 31614216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 31575866 - 31575686
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||||| |||||||| |||||||  || || |||| ||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||||||||||    
T  31575866 tatggtgtattcaaaccaaaccattagacaggccaccgatgaataaagtaatagaaatgttgcaaggaccactttcctcggtgtcatatcctccaaagcc 31575767  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattac 196  Q
     ||||||| || |||||||| | |||| ||| ||||| |  | || ||||||||| ||| | ||||||| ||||| |||||    
T  31575766 tgtcttattttctcctgaaaggacaccgctacaaatgccgcatatatcttcatccgattcgtatgagacaaattctattac 31575686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 31594926 - 31594744
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    |||||||||||||||| || ||||  ||||||||||  |||||||||||||| |||||| |  |||| || |||||||| ||  ||| ||||||||| ||    
T  31594926 tatggtgcattcaaacaaatccattagatagaccaccaatgaataaagtaattgaaatgctacaaggaccgctttcatcggtcacatttcctccaaaacc 31594827  T
Q  116 cgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaa 198  Q
     ||||||| || |||| ||| |||||||||| || | ||| | |||||||||||  ||| | | ||||| ||||| |||||||    
T  31594826 tgtcttattttctcctaaaaggccaccactacaactctcaaatatgtcttcatcagattggcaagagacaaattcaattacaa 31594744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 31532265 - 31532166
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    |||||||||||||||| || ||||| |||||||||   |||| |||||||| ||||||| |  |||| ||||||   |||||||||||||||||||||||    
T  31532265 tatggtgcattcaaacaaacccatccgatagaccatcaatgagtaaagtaacagaaatgctacaaggaccacttcagtcagtgccatatcctccaaagcc 31532166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 31573193 - 31573292
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||||||||||||||||| ||||  |||||||||  ||||| ||||||| |||||||| |  |||| ||||||   ||||||||||| |||||||||||    
T  31573193 tatggtgcattcaaacgaacccattagatagaccatcgatgagtaaagtattagaaatgctacaaggaccacttgattcagtgccataccctccaaagcc 31573292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 31439376 - 31439483
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    |||||||||||||||| || ||||| || ||||||   |||| |||||||||||||||| |  |||| ||||||   ||| | || ||||||||||||||    
T  31439376 tatggtgcattcaaacaaatccatcagagagaccatcaatgagtaaagtaatagaaatgctacaaggaccacttcattcaataccgtatcctccaaagcc 31439475  T
Q  116 cgtcttat 123  Q
    ||||||||    
T  31439476 cgtcttat 31439483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 33305507 - 33305601
Alignment:
Q  18 tggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaa 112  Q
    ||||||||||||||||| ||||| |||||||||   |||| |||||| ||||||||| |  |||| ||||||   |||||||||||||| |||||    
T  33305507 tggtgcattcaaacgaatccatcagatagaccatcaatgagtaaagtgatagaaatgcttcaaggaccacttgggtcagtgccatatcccccaaa 33305601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 31540891 - 31540775
Alignment:
Q  16 tatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    |||||||||||||||| || ||| | |||||||||   |||| ||||||| |||||||| |  |||| ||||||   || ||||||||||||||||||||    
T  31540891 tatggtgcattcaaacaaatccagccgatagaccatcaatgagtaaagtattagaaatgctacaaggaccacttcagtcggtgccatatcctccaaagcc 31540792  T
Q  116 cgtcttatgttatcctg 132  Q
      |||||| || |||||    
T  31540791 tttcttatattctcctg 31540775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1809 - 1712
Alignment:
Q  18 tggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||| ||||||||||| ||||| ||||| |||   |||| |||||||||||||||| || |||||||||||   ||| | | |||||||||||||||    
T  1809 tggtgtattcaaacgaatccatcagatagtccatcaatgagtaaagtaatagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcc 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 15063725 - 15063822
Alignment:
Q  18 tggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 115  Q
    ||||| ||||||||||| ||||| || ||||||   |||| |||||||||||||||| || |||||||||||   ||| | | |||||||||||||||    
T  15063725 tggtgtattcaaacgaatccatcagacagaccatcaatgagtaaagtaatagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcc 15063822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University