View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19212_low_9 (Length: 370)
Name: NF19212_low_9
Description: NF19212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19212_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 7809503 - 7809155
Alignment:
| Q |
14 |
ctaagttcattgacattgtataattcaagattctaatcttttagttttcaaaatcaaataattaaaaatctcgaacagttaatccaacggtcaattttgt |
113 |
Q |
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| T |
7809503 |
ctaagttcattgacattgtttaattcaagattctaatcttttagttttcaaaatcaaataattaaaaatctcgaacagttaatccaacggtcaattttgt |
7809404 |
T |
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| Q |
114 |
aataatatcaacaagaataaatgattatatcgtatagtaacattccccttttctaacataactccgtgcacaaattcatatgtttccttcaccccaccta |
213 |
Q |
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| T |
7809403 |
aataatatcaacaagaataaatgattatatcgtatagtaacattccccttttctaacataactccgtgcacaaatctatatgtttccttcatcccaccta |
7809304 |
T |
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| Q |
214 |
attgcactaatgcaactttgctcccacctaattgcattgtaaatgacaagcttatctcatcctcgtcaatttcaaaggtaaaaaattaatatacaacttc |
313 |
Q |
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| T |
7809303 |
attgcactaatgcaaccttgatcccacctaattgcattgtaaatgacaagcttatctcatcctcgtcaatttccaaggtaaaaaattaatatacaacttc |
7809204 |
T |
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| Q |
314 |
tatctttgtagatctcataccttctctctcaattgatcttcattcatct |
362 |
Q |
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| T |
7809203 |
tatctttgtatatctcatatcttctctctcaattgatcttcattcatct |
7809155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 362
Target Start/End: Original strand, 7832318 - 7832414
Alignment:
| Q |
266 |
tatctcatcctcgtcaatttcaaaggtaaaaaattaatatacaacttctatctttgtagat--ctcataccttctctctcaattgatcttcattcatct |
362 |
Q |
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| T |
7832318 |
tatctcattctcttcaatttccaaggaaaaaa--taacatacaacttctatctctgcacatatctcataccttctctctcaattgatcttcattcatct |
7832414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 7832126 - 7832170
Alignment:
| Q |
185 |
aaattcatatgtttccttcaccccacctaattgcactaatgcaac |
229 |
Q |
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| T |
7832126 |
aaattcatatgcttccttcatcccacctaattgcattaatgcaac |
7832170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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