View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_high_19 (Length: 241)
Name: NF19213_high_19
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 17812221 - 17811998
Alignment:
| Q |
1 |
cgagtccactaagttggcgacaccatatgatgacacgccctaaaacctactggattacggtacaggccgagatttcctcaccattaatccgagagctcct |
100 |
Q |
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| T |
17812221 |
cgagtccactaagttggcgacaccatatgatgacacgccctaaaacctactggattacggtacaggccgagatttcctcaccattaatccgagagctcct |
17812122 |
T |
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| Q |
101 |
taccaccccga-gggttactcatgtccgtaccccaggcatagatggctggagaagtgaggggttcaagaaagagagtgtcggagcgcgtgcagtgcaggt |
199 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||| |
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| T |
17812121 |
caccaccccgaggggttactcatgtccgtaccccaggaatagatggctggagaagtgaggggttcaagaa--agagtgtcagagcacatgcagtgcaggt |
17812024 |
T |
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| Q |
200 |
acaccatcccccttccagtggagaag |
225 |
Q |
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|||||| ||||||||| ||||||||| |
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| T |
17812023 |
acaccaccccccttccggtggagaag |
17811998 |
T |
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