View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_high_2 (Length: 611)
Name: NF19213_high_2
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 15 - 603
Target Start/End: Original strand, 44751143 - 44751730
Alignment:
| Q |
15 |
atcattctgtgtatctgatgttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttata |
114 |
Q |
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| T |
44751143 |
atcattctgtgtatctgatgttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtgtttata |
44751242 |
T |
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| Q |
115 |
tagcatccccttaaatcagttgcagaaaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattatatacaaa-at |
213 |
Q |
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| T |
44751243 |
tagcatccccttaaatcagttgcagaaaatgttccaacaagtttcctgcatctcccctgcaaccagattattgcattatgttagtattatatacaaagat |
44751342 |
T |
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| Q |
214 |
tgtnnnnnnnntgaaaagcacataaggaaaagagttattgacaatgagaagacttgcattgatatgttgcttgtgatcatcatcgccaacatcagaggct |
313 |
Q |
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| T |
44751343 |
tgtaaaaaatatgaaaagca--taaggaaaagagttaatgagaatgagaagacttgcattgatatgttgcttgtgatcatcatcgccaacatcagaggct |
44751440 |
T |
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| Q |
314 |
ctaacaattggaagtgcatttaacatagcagctttcaagcacttgatggcatcgatgagttttgtgcgttcggtgatggcgtaaatcctttcggtgattg |
413 |
Q |
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| T |
44751441 |
ctaacaattggaagtgcatttaacatagcagctttcaagcacttgatggcatcgatgagttttgtgcgttcggtgatggcgtaaatcctttcggtgatcg |
44751540 |
T |
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| Q |
414 |
ctcccaaatcttgaacagaatgtgaatgcagagtgctttgtagttcattgccgtgatctttcaagaaccgaagcacgtccatttgagtcagcatttggta |
513 |
Q |
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| T |
44751541 |
ctcccaaatcttgaacggaatgtgaatgcagagtgctttgtagttcattgccgtgatctttcaagaaccgaagcacgtccatttgagtcagcatttggta |
44751640 |
T |
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| Q |
514 |
gcttgaagaagattcaatgagttcaactccagctgagacgttctctatttggctgtcggtaggtatcatagcgcgatgtacccctttgct |
603 |
Q |
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| T |
44751641 |
gcttgaagaagattcaatgagttcaactccagctgagacgttctctatttggctgtcggtaggtatcatagcgcgatgtacccctttgct |
44751730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 44744503 - 44744596
Alignment:
| Q |
15 |
atcattctgtgtatctgatgttgtgtacaaaggactagttgcaatttgttcagtgaatgcaagtgcacttattcctaaccatgatttcaatgtg |
108 |
Q |
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|||||| |||||||| |||||||||||||||||||| ||||||||||||| ||| || || ||||||||| |||| |||||||||||||||||| |
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| T |
44744503 |
atcattatgtgtatcagatgttgtgtacaaaggacttgttgcaatttgtttagtaaaagctagtgcacttgttcccaaccatgatttcaatgtg |
44744596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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