View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_high_21 (Length: 238)
Name: NF19213_high_21
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 12959233 - 12959425
Alignment:
| Q |
29 |
cgtgtcgtatccattatcatcataaaggaccaccaggctagggtgtgtcctaagtcattgtacccactaaaatatcaattccagggttaattggttgatt |
128 |
Q |
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| T |
12959233 |
cgtgtcgtatccattatcatcataaaggaccacaagactagggtgtgtcttaagtcattgtacccactaaaatatcaattccagggttgattggttgatt |
12959332 |
T |
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| Q |
129 |
cagtcaatttctgcatttttcatgttttttggtttagtagttcgtatgaattctaaaattcggatgtgtaaaatacggaaattagcttaaaac |
221 |
Q |
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| T |
12959333 |
cagtcaatttctgcatttttcatgttttttggtttagtagctcgtatgaattctaaaatccggatgtgtaaaatacggaaattagcttaaaac |
12959425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 12959180 - 12959209
Alignment:
| Q |
1 |
ttaaaacagaaaaattaattaggttcgccg |
30 |
Q |
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| T |
12959180 |
ttaaaacagaaaaattaattaggttcgccg |
12959209 |
T |
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