View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19213_high_3 (Length: 549)
Name: NF19213_high_3
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 44436340 - 44436872
Alignment:
| Q |
1 |
tttttgctgcgaatgtcatcttctatgaggatgatgctctaccacaattctacatacatctctattgattttcctctatatatctttttgccatactaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436340 |
tttttgctgcgaatgtcatcttctatgaggaagatgctctaccacaattctacatacatctctattgattttcctctatatatctttttgccatactaac |
44436439 |
T |
|
| Q |
101 |
atttgaagcctcctaaagcagctgcgtaacagtatacttcaaaggctagattagaagcgtgattttttctcaccac--caaggcctgcacaatagataaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44436440 |
atttgaagcctcctaaagcagctgcgtaacagtatacttcaaaggctagattagaagcgtgattttttctcaccacaccaaggcctgcacaatagataaa |
44436539 |
T |
|
| Q |
199 |
atgatgggaaaacaaaaattgcctaccggtaaagtgatgcttgattatagtccacatatgcaattccttctaacaattaacaaaacgagagcattcaagg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436540 |
atgatgggaaaacaaaaattgcctaccggtaaagtgatgcttgattatagtccacatatgcaattccttctaacaattaacaaaacgagagcattcaagg |
44436639 |
T |
|
| Q |
299 |
aaagtgtgcaacttatcatcaaaactcccatgacacataacacactcggggcagtaggctgcatatactgtgttaaccagatccaagggtctgacctgat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44436640 |
aaagtgtgcaacttatcatcaaaactcccatgacacataacacactcggggcagtaggctgcatatactgcgttgaccagatccaagggtctgacctgat |
44436739 |
T |
|
| Q |
399 |
accatttccttcaccaatttcccacgtatatctaaaggacaacggcgatacaatactccaaatacttgtctatgtgtaacagatcgaggttgtcctccaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44436740 |
gccatttccttcaccaatttcccacgtatatctaaaggacaacggcgatacaatactccaaatacttctctatgtgtaacagatcgaggttgtcctccaa |
44436839 |
T |
|
| Q |
499 |
aaagccgcttcttgaaaaatatttatctctaag |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44436840 |
aaagccgcttcttgaaaaatatttatctctaag |
44436872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University