View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_high_8 (Length: 368)
Name: NF19213_high_8
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 48999851 - 48999513
Alignment:
| Q |
14 |
agaatatcttgccttctactttctttctgctcgtgatgctcctgagctattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
113 |
Q |
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| T |
48999851 |
agaaaatcttgccttctactttctttctgctcatggtgctcctgaactattcacaagcataaaatcaaccttcccttatctaaacatgacgatttatcac |
48999752 |
T |
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| Q |
114 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
213 |
Q |
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| T |
48999751 |
tttaattctgatcgtgttcgcggtaagatatcaaagtccattagaaaagcattggatcaacctttgaattatgcaaggatatatcttgcagatacaatac |
48999652 |
T |
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| Q |
214 |
cagaaaatgtacaacgtgtgatatatttagattctgaccttgttgtggttgatgatatagctaagctttggggtgtagacatggaagggaaagtagtggc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48999651 |
cagaaaatgtacaacgtgtgatatatttagattctgaccttgttgtagttgatgatatagctaagctttggggtgtagacatggaagggaaagtagtggc |
48999552 |
T |
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| Q |
314 |
tggtccagaatattgtcatacagatttcacattgtattt |
352 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
48999551 |
tgctccagaatattgtcatacagatttcacattgtattt |
48999513 |
T |
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