View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_low_15 (Length: 257)
Name: NF19213_low_15
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 37338066 - 37338176
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37338066 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttataaatttagtttcagatttc |
37338165 |
T |
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| Q |
231 |
tgtggaaaagt |
241 |
Q |
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| T |
37338166 |
tgtggaaaagt |
37338176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 11300106 - 11299996
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11300106 |
caagtcgtgcgtctgtgtagacagcctatcacgtaatggtcacgtgtacatggtttccttaattgtatttgctgtttttacaaatttagtttcagatttc |
11300007 |
T |
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| Q |
231 |
tgtggaaaagt |
241 |
Q |
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|||||| |||| |
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| T |
11300006 |
tgtggagaagt |
11299996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 37337942 - 37337985
Alignment:
| Q |
7 |
gaagcataggacgtacaccatagattgtgaagttgattgtgtgg |
50 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37337942 |
gaagtataggacgtacaccatagattgtgaagttgattgtgtgg |
37337985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 11300223 - 11300187
Alignment:
| Q |
14 |
aggacgtacaccatagattgtgaagttgattgtgtgg |
50 |
Q |
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| T |
11300223 |
aggacgtacaccatagattgcgaagttgattgtgtgg |
11300187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 15296897 - 15297006
Alignment:
| Q |
131 |
caagtcgtacgtatgtgtagacagcctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttc |
230 |
Q |
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|||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15296897 |
caagtcgtacgtctttgtagaca-cctatcacgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagattcagatttc |
15296995 |
T |
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| Q |
231 |
tgtggaaaagt |
241 |
Q |
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|||||| |||| |
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| T |
15296996 |
tgtggagaagt |
15297006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 47968015 - 47967935
Alignment:
| Q |
161 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggaaaagt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47968015 |
acgtaatggtcacatgtacatggttcccttaattgtatttgctgtttttacaaatttagtttcagatttctgtggagaagt |
47967935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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