View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_low_6 (Length: 389)
Name: NF19213_low_6
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 35 - 371
Target Start/End: Complemental strand, 14560142 - 14559806
Alignment:
| Q |
35 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
134 |
Q |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
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| Q |
135 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
234 |
Q |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
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| Q |
235 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
334 |
Q |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
14559843 |
T |
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| Q |
335 |
tattagacatgtccaatgactccagatgttttagatt |
371 |
Q |
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| T |
14559842 |
tattagacatgtccaatgactccagatgttttagatt |
14559806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 14569885 - 14569645
Alignment:
| Q |
47 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
146 |
Q |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
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| Q |
147 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
246 |
Q |
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||||||| |||| |||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| | ||||| |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
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| Q |
247 |
tttcccaccaagtgattacaagagaggttcataactgaaag |
287 |
Q |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggttcgtaactgaaag |
14569645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 32549371 - 32549223
Alignment:
| Q |
172 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtgattacaagaga |
271 |
Q |
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||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| ||| | || | |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtggttatatgaaa |
32549272 |
T |
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| Q |
272 |
ggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctc |
320 |
Q |
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||||||| |||| |||||||||||| |||||||||||| ||||||||| |
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| T |
32549271 |
ggttcatgactgcaagaaatgataaacttgcaagctctgtaggaatctc |
32549223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
39 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
86 |
Q |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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