View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19213_low_9 (Length: 365)
Name: NF19213_low_9
Description: NF19213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19213_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 31738125 - 31737879
Alignment:
| Q |
10 |
catcatcaaaactttggtaacaaatatggtaccctttcatatatattttttgtatcttttaaaagagtaaacgtttgtttgtttccaaattttctcacac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
31738125 |
catcatcaaaactttggtaacaaatatggtaccctttcatatatattttttgtatcttttaaaagagtaaccgtttgtttgtttccaagttttctcacac |
31738026 |
T |
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| Q |
110 |
aaaattgaaaagaactcaggcgcgatgcagaattttagaagctaccttcatttacttcaatccaccgtgatttggaacatggttacaccatgttttcaaa |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31738025 |
aaaattgaaaagaactgaggcgcgatgcagaattttagaagctaccttcatttacttcaatccaccgtgatttggaacatggttacaccatgttttcaaa |
31737926 |
T |
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| Q |
210 |
catacactaagttgcataagat-aaaagtatgagattgagacaaata |
255 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31737925 |
catacactaagttgcataagataaaaagtatgagattgagacaaata |
31737879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 31737850 - 31737753
Alignment:
| Q |
253 |
ataacctaactaattcaaaatcaaaactataacttgcagactagttcatgtatccatatc---atcagactcactaactgacttctcagaagtgcttc |
347 |
Q |
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| T |
31737850 |
ataacctaactaattcaaaatcaaaactataacttgcagactagttcatgtatccatatcatcatcagactcactaactgacttctcagaagtgcttc |
31737753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 6500588 - 6500343
Alignment:
| Q |
10 |
catcatcaaaactttggtaacaaatatggtaccctttcatatatattttttgtatcttttaaaagagtaaacgtttgtttgtttccaaattttctcacac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6500588 |
catcatcaaaactttggtaacaaatatggtaccctttcatatatattttttgtatcttttaaaagagtaaacgtttgtttgtttccaagttttctcacac |
6500489 |
T |
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| Q |
110 |
aaaattgaaaagaactcaggcgcgatgcagaattttagaagctaccttcatttacttcaatccaccgtgatttggaacatggttacaccatgttttcaaa |
209 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6500488 |
aaaattgaaaagaaccgaggcacgatgcagaattttagaagctaccttcatttacttcaatctaccgtgatttggaacatggttacaccatgttttcaaa |
6500389 |
T |
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| Q |
210 |
catacactaagttgcataagataaaagtatgagattgagacaaata |
255 |
Q |
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| T |
6500388 |
catacactaagttgcataagataaaagtatgagattgagacaaata |
6500343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 6500319 - 6500219
Alignment:
| Q |
250 |
caaataacctaactaattcaaaatcaaaactataacttgcagactagttcatgtatccatatc---atcagactcactaactgacttctcagaagtgctt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
6500319 |
caaataacctaactaattcaaaatcaaaactataacttgcagactagttcatgtatccatatcatcatcagactcactaactgccttctcagaagtgctt |
6500220 |
T |
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| Q |
347 |
c |
347 |
Q |
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| T |
6500219 |
c |
6500219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 47464500 - 47464434
Alignment:
| Q |
250 |
caaataacctaactaattcaaaatcaaaactataacttgc-agactagttcatgtatccatatcatc |
315 |
Q |
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|||||||| |||| | | |||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
47464500 |
caaataacataaccagtacaaaatcaaaactataacttgctacactagttcatatatccatatcatc |
47464434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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