View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_high_10 (Length: 337)
Name: NF19214_high_10
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 316
Target Start/End: Original strand, 6414925 - 6415231
Alignment:
| Q |
10 |
atgaaaggatacaacttgttcttgttaatgtttttgacaactcatggtgattcttggatgatactactaagaaatttcacaaagttatcaaagcaacctc |
109 |
Q |
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| T |
6414925 |
atgaaaggatacaacttgttcttgttaatgtttttgacaactcatggtgattcttggatgatactactaagaaatttcacaaagttatcaaagcaacctc |
6415024 |
T |
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| Q |
110 |
actcagggatcaaaattaattaatgtacaaacagtatagtcagcttgaatgtagtaataatttatgtacgtgacaatagtttaaaaaatagtactattgt |
209 |
Q |
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| T |
6415025 |
actcaaggaccaaaattaattaatgtacaaacagtatagtcagcttgaatgtagtaataatttatgtacgtgacaatagtttaaaaaatagtactattgt |
6415124 |
T |
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| Q |
210 |
taaagacattgatgttgtgaatttgaaggaaatatgaagtgaatcccagctagcatagttattagtacagctgcccgtgtgagttttggaatttgaaagc |
309 |
Q |
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| T |
6415125 |
taaagacattgatgttgtgaatttgaaggaaatatgaagtgaatcccagctagcatagttattagtacagctgcccgtgtgagttttggaatttgaaagc |
6415224 |
T |
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| Q |
310 |
atatcgc |
316 |
Q |
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||||||| |
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| T |
6415225 |
atatcgc |
6415231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 23287969 - 23287917
Alignment:
| Q |
10 |
atgaaaggatacaacttgttcttgttaatgtttttgacaactcatggtgattc |
62 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23287969 |
atgaaaggatacaatttgttcttgttaatgtttttgacaactcatggtgattc |
23287917 |
T |
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