View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19214_high_18 (Length: 238)

Name: NF19214_high_18
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19214_high_18
NF19214_high_18
[»] chr4 (4 HSPs)
chr4 (18-222)||(628287-628491)
chr4 (18-90)||(51719469-51719540)
chr4 (180-222)||(628236-628278)
chr4 (186-218)||(40923737-40923769)
[»] chr6 (3 HSPs)
chr6 (18-155)||(25403689-25403826)
chr6 (135-222)||(25403838-25403937)
chr6 (180-222)||(25403946-25403988)
[»] chr8 (3 HSPs)
chr8 (18-155)||(9387561-9387698)
chr8 (135-222)||(9387710-9387809)
chr8 (180-222)||(9387818-9387860)
[»] chr2 (8 HSPs)
chr2 (18-150)||(942926-943058)
chr2 (8-155)||(24928972-24929113)
chr2 (8-150)||(25678586-25678716)
chr2 (135-222)||(24929125-24929212)
chr2 (135-186)||(943075-943126)
chr2 (180-222)||(24929221-24929263)
chr2 (185-222)||(943137-943174)
chr2 (185-222)||(25678730-25678767)
[»] chr1 (3 HSPs)
chr1 (18-150)||(49030496-49030628)
chr1 (135-222)||(49030381-49030480)
chr1 (18-102)||(28446214-28446297)
[»] chr3 (7 HSPs)
chr3 (20-149)||(13840408-13840537)
chr3 (18-186)||(3860480-3860651)
chr3 (21-150)||(39685457-39685580)
chr3 (18-102)||(53814244-53814327)
chr3 (135-186)||(44430614-44430665)
chr3 (135-182)||(13840555-13840602)
chr3 (185-221)||(39685342-39685378)
[»] scaffold0246 (2 HSPs)
scaffold0246 (18-150)||(2509-2635)
scaffold0246 (138-186)||(2655-2703)
[»] chr7 (4 HSPs)
chr7 (18-155)||(41798814-41798945)
chr7 (18-87)||(44552388-44552457)
chr7 (138-222)||(44552225-44552321)
chr7 (103-150)||(44552341-44552388)
[»] scaffold0041 (3 HSPs)
scaffold0041 (18-91)||(23794-23867)
scaffold0041 (135-186)||(23683-23734)
scaffold0041 (110-150)||(23751-23791)
[»] chr5 (1 HSPs)
chr5 (18-102)||(6705731-6705814)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 628491 - 628287
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  628491 accaaaattattattgaataattgcatgttcactaaacagggaatgaaagaacaaaggcagcagcttctgccactgccactgccagtctggtctgcagcg 628392  T
Q  118 tgcatagcagaagcaccagcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgtactagcatgacttaagtcaagcaacgtgactta 217  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  628391 tgcatagcagaagcaccagcgtgagttaactcacgctactcattgaagtttttggtgcatgctttgcactagtgtgacttaagtcaagcaacgtgactta 628292  T
Q  218 agttg 222  Q
    |||||    
T  628291 agttg 628287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 51719469 - 51719540
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgcca 90  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||  || ||||| ||||||| |||||||||||    
T  51719469 accaaaattattattgaatgattgcatattcactaaagagggatagatggaac-aaggcagaagctactgcca 51719540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 628278 - 628236
Alignment:
Q  180 tttgtactagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||| |||||| |||||||||||||| ||||||||||||||||    
T  628278 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttg 628236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 40923737 - 40923769
Alignment:
Q  186 ctagcatgacttaagtcaagcaacgtgacttaa 218  Q
    ||||| |||||||||||||||||||||||||||    
T  40923737 ctagcgtgacttaagtcaagcaacgtgacttaa 40923769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 25403689 - 25403826
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25403689 accaaaattattattgaataattgcatgttcactaaacaaggaatgaaggaacaaaggcagcagctactgccactgccaatgccagtctggtctgcagcg 25403788  T
Q  118 tgcatagcagaagcaccagcgtgacttaactcatgcta 155  Q
    ||||||| |||||||||||||||| |||||||| ||||    
T  25403789 tgcatagtagaagcaccagcgtgagttaactcacgcta 25403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 25403838 - 25403937
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgt------------actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||||||||||    
T  25403838 agcgtgacttaactcacgttactcattgaagtttttggtgcatgctttgtaccagagacagaactagcgtgacttaagtcaagcaacgtgacttaagttg 25403937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 25403946 - 25403988
Alignment:
Q  180 tttgtactagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||| |||||| |||||||||||||| ||||||||||||||||    
T  25403946 tttgaactagcgtgacttaagtcaagtaacgtgacttaagttg 25403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 9387561 - 9387698
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||    
T  9387561 accaaaattattattgaataattgcatgttcactaaacaggaaatgaaggaacaaaggcagcaactactgccactgccattgccagtctggtctacagcg 9387660  T
Q  118 tgcatagcagaagcaccagcgtgacttaactcatgcta 155  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  9387661 tgcatagtagaagcaccagcgtgagttaactcatgcta 9387698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 9387710 - 9387809
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgt------------actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||||||||||    
T  9387710 agcgtgacttaactcacgctactcattgaagtttttggtgcatgctttgtaccacagacagaactagcgtgacttaagtcaagcaacgtgacttaagttg 9387809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 9387818 - 9387860
Alignment:
Q  180 tttgtactagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||| |||||| |||||||||||||| ||||||||||||||||    
T  9387818 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttg 9387860  T

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Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 942926 - 943058
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  942926 accaaaattattattgaataattgcatgttcactaaacaaggaatgaaggaacaaaggcagcagctactgccactgccactaccagtctggtctacagcg 943025  T
Q  118 tgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||||||||||| ||| ||||||||    
T  943026 tgcatagcagaagcaccagcttgagttaactca 943058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 24928972 - 24929113
Alignment:
Q  8 attctcttaaaccaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||| |||||    
T  24928972 attctcttaaaccaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagct------actgccactgcccgtctg 24929065  T
Q  108 gtctgcagcgtgcatagcagaagcaccagcgtgacttaactcatgcta 155  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  24929066 gtctgcagcgtgcatagcagaagcaccagcgtgagttaactcacgcta 24929113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 25678586 - 25678716
Alignment:
Q  8 attctcttaaaccaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  25678586 attctcttaaaccaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagct------------actgccagtctg 25678673  T
Q  108 gtctgcagcgtgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25678674 gtctgcagcgtgcatagcagaagcaccagcgtgagttaactca 25678716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 24929125 - 24929212
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgtactagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  24929125 agcgtgacttaactcacgctactcattgaagtttttggtgcatgttttgtactagtgtgacttaagtcaagcaacgtgacttaagttg 24929212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 943075 - 943126
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgtac 186  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  943075 agcgtgacttaactcacactactcattgaagtttttggtgcatgctttgtac 943126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 24929221 - 24929263
Alignment:
Q  180 tttgtactagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||| |||||| |||||||||||||| ||||||||||||||||    
T  24929221 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttg 24929263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 943137 - 943174
Alignment:
Q  185 actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  943137 actagcgtgacttaagtcaagtaacgtgacttaagttg 943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 25678730 - 25678767
Alignment:
Q  185 actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  25678730 actagcgtgactcaagtcaagcaacgtgacttaagttg 25678767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 49030628 - 49030496
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49030628 accaaaattattattgaataattgcatgttcactaaataggaaatgaaggaacaaaggcagcagctactgccattgccactgccagtctggtctgcagcg 49030529  T
Q  118 tgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||||||||| ||||| ||||||||    
T  49030528 tgcatagcagaagcaccaacgtgagttaactca 49030496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 49030480 - 49030381
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgt------------actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||||||||||    
T  49030480 agcgtgacttaactcacgctactcattgaagtttttggtgcatgctttgtaccagagacataactagcgtgacttaagtcaagcaacgtgacttaagttg 49030381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 28446214 - 28446297
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgcca 102  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||  || ||||| ||||||||||||| ||||||||||| |||||    
T  28446214 accaatattattattgaatgattgcatattcactaaacagggacagatggaac-aaggcagcagctattgccactgccattgcca 28446297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 13840408 - 13840537
Alignment:
Q  20 caaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcgtg 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  13840408 caaaattattatcgaataattgcatgttcactaaacagggaatgaaggaacaaaggcaacagctactgccactgccattgccagtctggtctgcagcgtg 13840507  T
Q  120 catagcagaagcaccagcgtgacttaactc 149  Q
    ||||||||||||| |||||||| |||||||    
T  13840508 catagcagaagcatcagcgtgagttaactc 13840537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 3860651 - 3860480
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||      ||||||||||||||    
T  3860651 accaaaattattattgaataattgcatgttcactaaatagggaatgaaggaacaaaggcagtagctattgccactgtcac------tctggtctgcagcg 3860558  T
Q  118 tgcatagcagaagcaccagcgtgactta---------actcatgctactcattgaagtttttggtgcatgctttgtac 186  Q
    |||||||||||||||||||||||| |||         ||||| |||||||||||||||||||||||||||||||||||    
T  3860557 tgcatagcagaagcaccagcgtgagttaagtcacgctactcacgctactcattgaagtttttggtgcatgctttgtac 3860480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 39685580 - 39685457
Alignment:
Q  21 aaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcgtgc 120  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      ||||||||||||||||||||||    
T  39685580 aaaattattatcgaataattgcatgttcactaaacagggaatgaaggaacaaatgcagcagctactgccact------gccagtctggtctgcagcgtgc 39685487  T
Q  121 atagcagaagcaccagcgtgacttaactca 150  Q
     ||||||||||| |||| | | ||||||||    
T  39685486 gtagcagaagcatcagctttagttaactca 39685457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 53814244 - 53814327
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgcca 102  Q
    |||||||||||||||||||  |||||| |||||||||||||||  || | ||| ||||||| ||||||||||||| |||||||||    
T  53814244 accaaaattattattgaatggttgcatattcactaaacagggacagatgaaac-aaggcagtagctactgccactaccactgcca 53814327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 44430665 - 44430614
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgtac 186  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  44430665 agcgtgacttaactcacgctactcattgtaggttttggtgcatgctttgtac 44430614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 13840555 - 13840602
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgcttt 182  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||    
T  13840555 agcgtgacttaactcacgctgctcattgtaggttttggtgcatgcttt 13840602  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 39685378 - 39685342
Alignment:
Q  185 actagcatgacttaagtcaagcaacgtgacttaagtt 221  Q
    |||||| |||||||||||||| |||||||||||||||    
T  39685378 actagcgtgacttaagtcaagtaacgtgacttaagtt 39685342  T

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Target: scaffold0246 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 2509 - 2635
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||     
T  2509 accaaaattattattgaataattgcatgtttactaaacagggaatgaaggaacaaaggcagcagct------actgccactgccagtctggtctgcagca 2602  T
Q  118 tgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||||||||||| ||| ||||||||    
T  2603 tgcatagcagaagcaccagcatgagttaactca 2635  T

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Target: scaffold0246; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 2655 - 2703
Alignment:
Q  138 gtgacttaactcatgctactcattgaagtttttggtgcatgctttgtac 186  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2655 gtgacttaactcacgctactcattgaagtttttggtgcatgctttgtac 2703  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 41798945 - 41798814
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgccagtctggtctgcagcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||      || |||||||||||||||||||||| ||    
T  41798945 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcaacaact------acagccactgccagtctggtctgcaacg 41798852  T
Q  118 tgcatagcagaagcaccagcgtgacttaactcatgcta 155  Q
    |||||||||||||||| ||| ||| |||||||| ||||    
T  41798851 tgcatagcagaagcacaagcttgagttaactcacgcta 41798814  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 44552457 - 44552388
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  44552457 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcaacaactactg 44552388  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 44552321 - 44552225
Alignment:
Q  138 gtgacttaactcatgctactcattgaagtttttggtgcatgctttgt------------actagcatgacttaagtcaagcaacgtgacttaagttg 222  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  44552321 gtgacttaactcacgccactcattgaagtttttggtgcatgctttgtaccagagacagaactagcatgacttaagtcaagcaacgtgacttaagttg 44552225  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 44552388 - 44552341
Alignment:
Q  103 gtctggtctgcagcgtgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  44552388 gtctggtctgcaacgtgcatagcagaagcaccatcgtgagttaactca 44552341  T

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Target: scaffold0041 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 23867 - 23794
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccac 91  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23867 accaaaattattattgaataattgcatgttcactaaacaaggaatgaaggaacaaaggcagcagctactgccac 23794  T

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Target: scaffold0041; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 23734 - 23683
Alignment:
Q  135 agcgtgacttaactcatgctactcattgaagtttttggtgcatgctttgtac 186  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23734 agcgtgacttaactcacgctactcattgaagtttttggtgcatgctttgtac 23683  T

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Target: scaffold0041; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 23791 - 23751
Alignment:
Q  110 ctgcagcgtgcatagcagaagcaccagcgtgacttaactca 150  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  23791 ctgcagcgtgcatagcagaagcaccagcgtgagttaactca 23751  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 6705731 - 6705814
Alignment:
Q  18 accaaaattattattgaataattgcatgttcactaaacagggaatgaaggaacaaaggcagcagctactgccactgccactgcca 102  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  || ||||| |||||||||||||||||||||||||||||||    
T  6705731 accaaaattattattgaatgattgcatattcactaaacagggacagatggaac-aaggcagcagctactgccactgccactgcca 6705814  T

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