View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_high_2 (Length: 517)
Name: NF19214_high_2
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 25 - 499
Target Start/End: Complemental strand, 4778488 - 4778015
Alignment:
| Q |
25 |
acaccagcgctggcaatagcagcattggtaccgggtgtcaccaacaaagaaattaattaattttatat----ttatgcaatcctattaaaagccacgtgg |
120 |
Q |
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| T |
4778488 |
acaccagcgccggcaatagcagcattggtattgggtgtcaccagcaaagaaattaattaattttatatatatttatgcaatcctattaaatgctacgtgg |
4778389 |
T |
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| Q |
121 |
aatagtgctgcgtagtcaatgacacataaacaaaatggtgccaaatcattaagtaaacaagtttaggaactattttaaaaataaattaaaaattgcaaga |
220 |
Q |
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| T |
4778388 |
aatagtactgcacagtcaatgacacataaataaaatggtgccaaatcattaagtaaacgagttttggaactattttaaaaataaattaaaaattgcaaga |
4778289 |
T |
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| Q |
221 |
gcatatttctttannnnnnnnncttctcagggaccgaaacccaaactgtcatgtttgcaaggatcaaaaacatatttttaatcttttttgtttacttaaa |
320 |
Q |
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| T |
4778288 |
gcatatttcattttttt------ttctcagggatcgaaacctaaattgtcatgtttgcaaggatcaaaaacatatttttaatcttttttatttacttaaa |
4778195 |
T |
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| Q |
321 |
aaattaatatgtcgatttcaaaagtaaataaattattcataaacattatattgaaaagtacctaaaacaaatttattgccgatgtatatat--tgctaat |
418 |
Q |
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| T |
4778194 |
aa-ttaatatgtcgattttaaaagtaaagaaattattcataaacattatattgaaaaacacctgaaacaaatttattgccgatgtatatatattgctaat |
4778096 |
T |
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| Q |
419 |
gtatatatatgattgagacataaccacaaaagttctgtacaagatggagaggatgtcaactctaccctcatagttgactat |
499 |
Q |
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| T |
4778095 |
gtatatatatgattgagacataaccacaaaagttatgtacaagatggagaggatgtcaactctaccctcatagttgactat |
4778015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 4928558 - 4928462
Alignment:
| Q |
304 |
ttttttgtttacttaaaaaattaatatgtcgatttcaaaag-taaataaattattcataaacattatattgaaaagtacctaaaacaaatttattgc |
399 |
Q |
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| T |
4928558 |
ttttttatttacttataaaatgaatatgttaattttaaaaaataaatcaattaattataaactgtatattgaaaaatacctaaatcaaatttattgc |
4928462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 4892971 - 4892912
Alignment:
| Q |
340 |
aaaagtaaataaattattcataaacattatattgaaaagtacctaaaacaaatttattgc |
399 |
Q |
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| T |
4892971 |
aaaagtaaatcaattaatcaagaacaatatattggaaagtacctacaacaaatttattgc |
4892912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 36748250 - 36748202
Alignment:
| Q |
250 |
gggaccgaaacccaaactgtcatgtttgcaaggatcaaaaacatatttt |
298 |
Q |
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| T |
36748250 |
gggaccaaaacccaaactctcatatttgcagggaccaaaaacatatttt |
36748202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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