View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19214_high_9 (Length: 362)

Name: NF19214_high_9
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19214_high_9
NF19214_high_9
[»] chr3 (10 HSPs)
chr3 (18-342)||(32463656-32463980)
chr3 (162-321)||(26678166-26678326)
chr3 (129-298)||(31637504-31637674)
chr3 (126-298)||(6999528-6999701)
chr3 (224-321)||(30468702-30468799)
chr3 (185-298)||(16932960-16933073)
chr3 (228-322)||(25737535-25737629)
chr3 (276-318)||(26682368-26682410)
chr3 (50-100)||(26678415-26678465)
chr3 (185-298)||(12723453-12723566)
[»] chr2 (6 HSPs)
chr2 (99-321)||(17902756-17902974)
chr2 (201-319)||(39648250-39648368)
chr2 (224-321)||(12997272-12997369)
chr2 (224-321)||(26423239-26423336)
chr2 (192-271)||(3121148-3121227)
chr2 (202-272)||(26999275-26999345)
[»] chr5 (6 HSPs)
chr5 (129-298)||(33305019-33305189)
chr5 (224-321)||(22697619-22697716)
chr5 (147-321)||(18678436-18678611)
chr5 (224-321)||(31089447-31089544)
chr5 (224-321)||(24442586-24442683)
chr5 (201-322)||(20863992-20864113)
[»] chr1 (5 HSPs)
chr1 (129-298)||(35322254-35322424)
chr1 (224-321)||(45274306-45274403)
chr1 (201-298)||(14585829-14585926)
chr1 (185-298)||(33737541-33737654)
chr1 (241-293)||(31592302-31592354)
[»] chr4 (6 HSPs)
chr4 (126-298)||(6682678-6682851)
chr4 (224-321)||(36220790-36220887)
chr4 (228-318)||(33037116-33037206)
chr4 (224-321)||(12702007-12702104)
chr4 (224-321)||(12904102-12904199)
chr4 (185-298)||(36480842-36480955)
[»] chr6 (3 HSPs)
chr6 (129-298)||(13997246-13997416)
chr6 (185-255)||(1856238-1856308)
chr6 (185-298)||(330163-330276)
[»] scaffold0233 (1 HSPs)
scaffold0233 (112-271)||(19363-19524)
[»] chr8 (1 HSPs)
chr8 (224-321)||(17904717-17904814)
[»] chr7 (4 HSPs)
chr7 (208-314)||(36065707-36065813)
chr7 (243-321)||(5045512-5045590)
chr7 (185-298)||(48207482-48207595)
chr7 (235-272)||(18860560-18860597)
[»] scaffold0479 (1 HSPs)
scaffold0479 (185-298)||(10779-10892)
[»] scaffold0112 (1 HSPs)
scaffold0112 (92-213)||(23815-23937)
[»] scaffold0570 (1 HSPs)
scaffold0570 (93-294)||(4922-5124)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 32463980 - 32463656
Alignment:
Q  18 cttgtattcgagatgtaggaggaaactttatgatagccaaaactgaatggctcacccccataattgatgttgacatgggtgaaagaactcaacctggtga 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32463980 cttgtattcgagatgtaggaggaaactttgtgatagccaaaactgaatggctcacccccataatcgatgttgacatgggtgaaagaactcaacctggtga 32463881  T
Q  118 acatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgatttatgacaataatcaatgattgtagacacttg 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32463880 acatagattttgaaacggactctaaagttatggcacatagcatatatgggaaggacggtgtctttgatttatgacaataatcaatgattgtagacacttg 32463781  T
Q  218 ttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtt 317  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32463780 ttgggaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaagaaaacaccacataatgctagtt 32463681  T
Q  318 tccaaatggcttaaatgcacttttg 342  Q
    |||| ||||||||||||||||||||    
T  32463680 tccagatggcttaaatgcacttttg 32463656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 26678326 - 26678166
Alignment:
Q  162 tatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattagga 260  Q
    |||||||| |||  ||||| |||||| ||| ||||||| ||||||||||||||||| |||||||||||| |||||||||  ||||| ||||| |||||||    
T  26678326 tatgggaaggacaatgtctctgatttcatggcaataataaatgattgtagacacttattggaaactgatctaacgaactcggatgtaaagttcattagga 26678227  T
Q  261 gacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    |||||||||||  | ||||||||||||||| ||| ||| ||||| ||||| ||||||||||    
T  26678226 gacaagccaatggtgttgcccatagtctagataaagaagcaccatataatactagtttcca 26678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 31637504 - 31637674
Alignment:
Q  129 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 227  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  31637504 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 31637603  T
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  31637604 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 31637674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 298
Target Start/End: Complemental strand, 6999701 - 6999528
Alignment:
Q  126 tttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaa 224  Q
    ||||||||  |||| |||||||||||  |||| |||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   |    
T  6999701 tttgaaacaaactcaaaagttgtggctgatagaatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagta 6999602  T
Q  225 ctgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    |  |||||  ||||| |||||||||||| ||||||||||||| ||||  | | || |||||| |||||||||||    
T  6999601 ccaatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgtggctcatagtttagctaaggaa 6999528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 30468799 - 30468702
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  30468799 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 30468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 16933073 - 16932960
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||| ||| ||||||||||||||||| ||   || |||||||| |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  16933073 tttatggcaattatccatgattgtagacacttgctgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatggtgttgcccata 16932974  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  16932973 gtttagctagggaa 16932960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 25737535 - 25737629
Alignment:
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttccaa 322  Q
    ||||| |||||| |||||| |||||||||||||||||| || ||||| |||||||||| ||||||| | || ||  |||| |||||| |||||||    
T  25737535 atttagcgaactctgatgtaaagtttattaggagacaaacctataatgttgcccatagcctagctaggaaagcattacatcatgctaatttccaa 25737629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 26682368 - 26682410
Alignment:
Q  276 ttgcccatagtctagctaaggaaacaccacataatgctagttt 318  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  26682368 ttgcccatagtctagttaaggaaacaccatataatgctagttt 26682410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 26678465 - 26678415
Alignment:
Q  50 atagccaaaactgaatggctcacccccataattgatgttgacatgggtgaa 100  Q
    ||||| ||||||| |||| |||| |||||| ||||||||||||||||||||    
T  26678465 atagcaaaaactgcatggatcactcccatacttgatgttgacatgggtgaa 26678415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 12723566 - 12723453
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||| ||| ||||||||||||||||||||   || |||||||  |||| ||||||||  || ||||||||| ||  ||||  | |||||||||    
T  12723566 tttatggcaattatccatgattgtagacacttgttgatgaccgatttaataaactctgatgtgagtttaattaggagataaatcaatggtgttgcccata 12723467  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  12723466 gtttagctagggaa 12723453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 99 - 321
Target Start/End: Original strand, 17902756 - 17902974
Alignment:
Q  99 aaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataa 197  Q
    ||||||||||| ||||||||||| |||||  || |||||||||||||||||||  |||||||||||||||| |  ||||||| |||||| ||| ||||||    
T  17902756 aaagaactcaagctggtgaacatggatttaaaagcggactctaaagttgtggcggatagcatatatgggaagggtggtgtctctgatttcatggcaataa 17902855  T
Q  198 tcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaagga 297  Q
    |||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||| ||||  | |||||||||||     | ||||    
T  17902856 tcaatgattgtagacacttgttagaaactgatttaatgaacttggatgtgaagtttattaggagacaagtcaatggtgttgcccatagt-----ttagga 17902950  T
Q  298 aacaccacataatgctagtttcca 321  Q
    |  |||||||||||||||||||||    
T  17902951 agtaccacataatgctagtttcca 17902974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 39648250 - 39648368
Alignment:
Q  201 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaac 300  Q
    ||||||||||||||||||||   ||||||||| ||||||  ||||||||||| || | |||||| ||||||| | ||||||||||| ||||||||||| |    
T  39648250 atgattgtagacacttgttgatgactgatttagcgaactcagatgtgaagttcatcaagagacaggccaatagtgttgcccatagtttagctaaggaagc 39648349  T
Q  301 accacataatgctagtttc 319  Q
    || | || |||||||||||    
T  39648350 actatattatgctagtttc 39648368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 12997272 - 12997369
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  12997272 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 12997369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 26423239 - 26423336
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    |||||||||  ||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  26423239 actgatttagtgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 26423336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 3121148 - 3121227
Alignment:
Q  192 caataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaat 271  Q
    ||||||||||||||||||||||||| || || || |||||| ||||||  ||||||||||| ||| | ||||||||||||    
T  3121148 caataatcaatgattgtagacactttttagacaccgatttatcgaactcggatgtgaagttcattcgaagacaagccaat 3121227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 26999345 - 26999275
Alignment:
Q  202 tgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaata 272  Q
    |||||||||||||||||||   | |||||||  ||||| |||| ||||||| ||||| |||||||||||||    
T  26999345 tgattgtagacacttgttgatgattgatttagtgaactctgatttgaagttcattagaagacaagccaata 26999275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 298
Target Start/End: Complemental strand, 33305189 - 33305019
Alignment:
Q  129 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 227  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  33305189 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 33305090  T
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  33305089 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 33305019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 22697716 - 22697619
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  22697716 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 22697619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 321
Target Start/End: Original strand, 18678436 - 18678611
Alignment:
Q  147 gtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatg 245  Q
    |||||| ||||||||||||| || |||| ||||| |||||| ||| ||||||| |||||||||||||| ||||| |  || ||||||   |||| | |||    
T  18678436 gtggcagatagcatatatggaaaggacgatgtctctgatttcatggcaataattaatgattgtagacatttgttaggtaccgatttagtaaactctaatg 18678535  T
Q  246 tgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    |||  || ||||||||||||||||||| | |||| |||||| ||||||||||| ||| | | ||||||||| ||||    
T  18678536 tgagtttcattaggagacaagccaatagtgttgctcatagtttagctaaggaatcactatacaatgctagtctcca 18678611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 31089447 - 31089544
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  |||||||| |||||||| |||| ||| | || |||||||||||||    
T  31089447 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgcccataatctagctagggaagcactaaatcatgctagtttcca 31089544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 24442586 - 24442683
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| |||||||||||| |||||| | ||||||||| ||||||||  ||| ||| | || |||||||||||||    
T  24442586 actgatttagcgaactctgatgtgaagttcattaggagacaaaccaatagtgttgcccataatctagctagagaagcactaaatcatgctagtttcca 24442683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 20863992 - 20864113
Alignment:
Q  201 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaac 300  Q
    ||||||||| ||||||||||   ||| ||||||| ||||   || ||||||||||||| ||||||||||| | | |||| |||||  |||||| |||  |    
T  20863992 atgattgtaaacacttgttgatgactaatttaacaaactccaatatgaagtttattagaagacaagccaacagtgttgctcatagcatagctagggaggc 20864091  T
Q  301 accacataatgctagtttccaa 322  Q
    |  ||||||||||| |||||||    
T  20864092 attacataatgctattttccaa 20864113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 298
Target Start/End: Original strand, 35322254 - 35322424
Alignment:
Q  129 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 227  Q
    ||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  35322254 gaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgatttcatggcaataatcaatgattgtagacacttgttgagtaccg 35322353  T
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    |||||  ||||| |||||||||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  35322354 atttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 35322424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 45274403 - 45274306
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| |  ||| |||| |||||||| |||| ||| | || |||||||||||||    
T  45274403 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgctgctcataatctagctagggaagcactaaatcatgctagtttcca 45274306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 14585829 - 14585926
Alignment:
Q  201 atgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    ||||||||| ||||||||||   || || ||| | |||| ||||||||| |||||||||||||||||||||  | ||||||||||| |||||| ||||    
T  14585829 atgattgtaaacacttgttgatgaccgacttagcaaactctgatgtgaattttattaggagacaagccaatggtgttgcccatagtttagctagggaa 14585926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 33737654 - 33737541
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  33737654 tttatggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccata 33737555  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  33737554 gtttagctagggaa 33737541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 31592302 - 31592354
Alignment:
Q  241 tgatgtgaagtttattaggagacaagccaataatattgcccatagtctagcta 293  Q
    |||||||| |||||||||||||||||||||| |  |||| |||||| ||||||    
T  31592302 tgatgtgaggtttattaggagacaagccaatgaagttgctcatagtttagcta 31592354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 6682678 - 6682851
Alignment:
Q  126 tttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaa 224  Q
    |||||||| ||||| |||||||||||  ||||||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   |    
T  6682678 tttgaaacagactcaaaagttgtggctgatagcatatatggcaaggagggtgtctctgattttatggcaataatcaatgattgtagacacttgttgagta 6682777  T
Q  225 ctgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    | ||||||  ||||| |||||| ||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  6682778 ccgatttagtgaactctgatgtaaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 6682851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 36220887 - 36220790
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||  ||||||||||||||||||| ||||||||||| |||||||| |||| ||| | || |||||||||||||    
T  36220887 actgatttagcgaactctgatgtgaagtccattaggagacaagccaatagtattgcccataatctagctagggaagcactaaatcatgctagtttcca 36220790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 33037206 - 33037116
Alignment:
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagttt 318  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||| | ||||||||||| |||||| |||  ||| | || ||||||||||    
T  33037206 atttaacaaactctgatgtgaagtttattaggagacaaaccaatagtgttgcccatagtttagctagggaggcactaaattatgctagttt 33037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 12702104 - 12702007
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| |||||||||||| |||||| | ||||| ||| |||| ||| |||| ||| | || || ||||||||||    
T  12702104 actgatttagcgaactctgatgtgaagttcattaggagacaaaccaatagttttgcctataatctaactagggaagcactaaatcatcctagtttcca 12702007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 12904102 - 12904199
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| ||||||   |||||||||| ||||||||||||||||||| | ||||| ||| |||| ||| |||| ||| | || || ||||||||||    
T  12904102 actgatttagcgaactcatatgtgaagttcattaggagacaagccaatagtgttgcctataatctaactagggaagcactaaatcatcctagtttcca 12904199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 36480955 - 36480842
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  36480955 tttatggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccata 36480856  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  36480855 gtttagctagggaa 36480842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 129 - 298
Target Start/End: Complemental strand, 13997416 - 13997246
Alignment:
Q  129 gaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtagacacttgttggaaactg 227  Q
    ||||| ||||| |||||||||||  ||| ||||||||| || || ||||||| |||||| ||| |||||||||||||||||||||||||||||   || |    
T  13997416 gaaacagactcaaaagttgtggctgataacatatatggcaaggagggtgtctctgattttatggcaataatcaatgattgtagacacttgttgagtaccg 13997317  T
Q  228 atttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaa 298  Q
    |||||  ||||| |||||| ||||| ||||||||||||| ||||  | |||| |||||| |||||||||||    
T  13997316 atttagtgaactctgatgttaagttcattaggagacaagtcaatggtgttgctcatagtttagctaaggaa 13997246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 1856308 - 1856238
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttat 255  Q
    |||||| |||||||||| ||||||||||| |||||||  ||||||||||  |||| |||||||||||||||    
T  1856308 tttatggcaataatcaaagattgtagacaattgttggtcactgatttaataaactctgatgtgaagtttat 1856238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 330163 - 330276
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||||||  ||||||||||||||||||||   || || |||   |||| ||||||||  |||||||||||||||||||||  | |||||||||    
T  330163 tttatggcaataattcatgattgtagacacttgttgatgaccgacttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccata 330262  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  330263 gtttagctagggaa 330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 19524 - 19363
Alignment:
Q  112 tggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atgacaataatcaatgattgtag 210  Q
    ||||| |||| ||||| ||||| ||||  ||||||| |||  ||||||||||||| || || |||||||||||||| ||| ||||||| |||||||||||    
T  19524 tggtgcacatggatttcgaaacagactgaaaagttgcggctgatagcatatatggcaaggatggtgtctttgatttcatggcaataataaatgattgtag 19425  T
Q  211 acacttgttggaaactgatttaacg-aactatgatgtgaagtttattaggagacaagccaat 271  Q
    |||||||||| | |||||||||  | |||| |||||||||||| ||||||||||||| ||||    
T  19424 acacttgttgaatactgatttagtgaaactctgatgtgaagttcattaggagacaagtcaat 19363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 17904814 - 17904717
Alignment:
Q  224 actgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||||| |||||||| | || |||||||||||||    
T  17904814 actgatttagcgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccataatctagctagggaaacactaaatcatgctagtttcca 17904717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 36065707 - 36065813
Alignment:
Q  208 tagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacat 307  Q
    ||||||||||||||  ||||||||| |||||| || ||||||||| |||| ||||||| ||||| ||||||| ||||||||||| | |||| ||||||||    
T  36065707 tagacacttgttggccactgatttagcgaactttgttgtgaagttcattaagagacaaaccaatgatattgctcatagtctagcgagggaagcaccacat 36065806  T
Q  308 aatgcta 314  Q
     ||||||    
T  36065807 catgcta 36065813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 321
Target Start/End: Original strand, 5045512 - 5045590
Alignment:
Q  243 atgtgaagtttattaggagacaagccaataatattgcccatagtctagctaaggaaacaccacataatgctagtttcca 321  Q
    |||||||||||||||||||||||||||||| | ||||||||| |||||||| |||| ||| | || |||||||||||||    
T  5045512 atgtgaagtttattaggagacaagccaatagtgttgcccataatctagctagggaagcactaaatcatgctagtttcca 5045590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 48207482 - 48207595
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||||||  |||||||||||||||| |||   || || |||   |||| ||||||||  |||||||||||||||||||||  | |||||||||    
T  48207482 tttatggcaataattcatgattgtagacactttttgatgaccgacttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccata 48207581  T
Q  285 gtctagctaaggaa 298  Q
    || |||||| ||||    
T  48207582 gtttagctagggaa 48207595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 18860597 - 18860560
Alignment:
Q  235 gaactatgatgtgaagtttattaggagacaagccaata 272  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  18860597 gaactatgatgtgaagtttattaggagataagcaaata 18860560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 10779 - 10892
Alignment:
Q  185 tttatgacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccata 284  Q
    |||||| |||| ||| ||||||||||||||||||||   || |||||||| |||| ||||||||  || ||||||||||||||||||  | |||||||||    
T  10779 tttatgccaattatccatgattgtagacacttgttgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatcgtgttgcccata 10878  T
Q  285 gtctagctaaggaa 298  Q
    || |||||||||||    
T  10879 gtttagctaaggaa 10892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 23815 - 23937
Alignment:
Q  92 atgggtgaaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatgggaatgacggtgtctttgattt-atg 190  Q
    |||||| ||||| || |||  |||| |||| ||||| ||||| ||||| ||||||| |||   |||||||||||| || || |||||||  ||||| |||    
T  23815 atgggtaaaagagctaaacacggtgcacatcgatttcgaaacagactcaaaagttgcggctgttagcatatatggaaaggagggtgtctcagatttcatg 23914  T
Q  191 acaataatcaatgattgtagaca 213  Q
     ||||||||||||||||||||||    
T  23915 gcaataatcaatgattgtagaca 23937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 294
Target Start/End: Complemental strand, 5124 - 4922
Alignment:
Q  93 tgggtgaaagaactcaacctggtgaacatagattttgaaacggactctaaagttgtggcacatagcatatatg--ggaatgacggtgtctttgattt-at 189  Q
    ||||||||||| || ||| |||||| ||| ||||||||||| ||||| ||  |||||||| ||||  | |||   ||||  | ||||||| |||||| ||    
T  5124 tgggtgaaagagcttaacatggtgagcatggattttgaaacagactcaaagattgtggcagatagtgtttataaaggaa--atggtgtctctgattttat 5027  T
Q  190 gacaataatcaatgattgtagacacttgttggaaactgatttaacgaactatgatgtgaagtttattaggagacaagccaataatattgcccatagtcta 289  Q
    | |||||||  | ||||||||||||||||||   || ||||||   |||| ||||||||  || ||||| ||||||||||||  | ||||||||||| ||    
T  5026 ggcaataattcaagattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattagaagacaagccaatggtgttgcccatagttta 4927  T
Q  290 gctaa 294  Q
    |||||    
T  4926 gctaa 4922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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