View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19214_low_1 (Length: 695)

Name: NF19214_low_1
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19214_low_1
NF19214_low_1
[»] chr4 (8 HSPs)
chr4 (533-679)||(5922977-5923123)
chr4 (533-679)||(5530679-5530825)
chr4 (533-679)||(5936386-5936532)
chr4 (296-449)||(5922732-5922885)
chr4 (22-159)||(5922376-5922506)
chr4 (533-679)||(38178776-38178922)
chr4 (358-401)||(5936291-5936334)
chr4 (194-256)||(40699887-40699949)
[»] chr2 (1 HSPs)
chr2 (534-669)||(11734138-11734273)
[»] chr8 (3 HSPs)
chr8 (534-678)||(40919556-40919700)
chr8 (534-666)||(45319373-45319505)
chr8 (187-243)||(14134769-14134825)
[»] chr7 (1 HSPs)
chr7 (545-639)||(34839859-34839953)
[»] chr3 (2 HSPs)
chr3 (534-646)||(53148130-53148242)
chr3 (324-393)||(5577549-5577618)
[»] chr1 (1 HSPs)
chr1 (545-669)||(45454432-45454556)
[»] chr5 (2 HSPs)
chr5 (194-235)||(27932313-27932354)
chr5 (191-243)||(7997103-7997155)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 8e-63; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 533 - 679
Target Start/End: Original strand, 5922977 - 5923123
Alignment:
Q  533 ataccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaat 632  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |    
T  5922977 ataccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagt 5923076  T
Q  633 tgttacccgcaccactctgaccaaacacaaagttatccggtctaaag 679  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||    
T  5923077 tattaccagcaccactctgaccaaacacaaagttatccggtctaaag 5923123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 533 - 679
Target Start/End: Complemental strand, 5530825 - 5530679
Alignment:
Q  533 ataccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaat 632  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |    
T  5530825 ataccctgcaagcaatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatgccctttagcccagt 5530726  T
Q  633 tgttacccgcaccactctgaccaaacacaaagttatccggtctaaag 679  Q
    | || || ||||||||||||||||||||||| |||||||||||||||    
T  5530725 tattcccagcaccactctgaccaaacacaaaattatccggtctaaag 5530679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 533 - 679
Target Start/End: Original strand, 5936386 - 5936532
Alignment:
Q  533 ataccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaat 632  Q
    |||||||||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |    
T  5936386 ataccctgcaagcaatcactgttttcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgtcctttagcccagt 5936485  T
Q  633 tgttacccgcaccactctgaccaaacacaaagttatccggtctaaag 679  Q
    | ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  5936486 tattaccagcaccactctgtccaaagacaaagttatccggtctaaag 5936532  T

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Target: chr4; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 296 - 449
Target Start/End: Original strand, 5922732 - 5922885
Alignment:
Q  296 acaaattaaattttcacccagctaattaacaatcagccacaaatcttgcaaaataacccacctatagcaaaattaacacatacccatcacaaattaaccc 395  Q
    |||||||||||||||||  | |||||| ||||||||||||||||| ||||||||||||||||  || ||||||||||||||||||||||||||||| |||    
T  5922732 acaaattaaattttcacagaactaattgacaatcagccacaaatcatgcaaaataacccaccggtatcaaaattaacacatacccatcacaaattacccc 5922831  T
Q  396 acaaaattctgtaaaaacccaccaaacacttcaacaatttcattttcataagaa 449  Q
    ||||||| ||||||||||| | |||||||||| |||||||||||||||||||||    
T  5922832 acaaaatcctgtaaaaaccaatcaaacacttcgacaatttcattttcataagaa 5922885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 5922376 - 5922506
Alignment:
Q  22 acaacaagaagtcattcaattacaacaaataaaggcacccatttgatttaattgaacagaagaagaaaattcatacaccaaacgcgcaatcagccacaaa 121  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||     ||||||| |||| ||  |||||||| ||||||| ||||||||||||| |||    
T  5922376 acaacaagcagtcattcaattccaacaaaaaaaggcacccattt-----aattgaagagaaaaa--aaattcatgcaccaaatgcgcaatcagccataaa 5922468  T
Q  122 gcaggtaaaagatacactccatatcaaaattaacacaa 159  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  5922469 gcaggcaaaagatccactccatatcaaaattaacacaa 5922506  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 533 - 679
Target Start/End: Original strand, 38178776 - 38178922
Alignment:
Q  533 ataccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaat 632  Q
    ||||| ||||||||||| ||||||||||| |||||||| |||||||| | ||| |||||||| | |||||||||||| |||||||| |||||||||||||    
T  38178776 ataccttgcaagcaatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatgacctttcgcccaat 38178875  T
Q  633 tgttacccgcaccactctgaccaaacacaaagttatccggtctaaag 679  Q
    | || || |||||   |||||| || || ||||||||||||| ||||    
T  38178876 tatttccggcaccggactgaccgaaaacgaagttatccggtcgaaag 38178922  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 5936291 - 5936334
Alignment:
Q  358 tatagcaaaattaacacatacccatcacaaattaacccacaaaa 401  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  5936291 tatagcaaaattaacacatacccataacaaattaactcacaaaa 5936334  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 40699887 - 40699949
Alignment:
Q  194 ctatgaagcacaaaaactcctcgaattaggtgtctcctggtgacggacaccgacacatatgat 256  Q
    |||||||||||||| |||||| | ||||  ||| |||||||| |||||| |||||||||||||    
T  40699887 ctatgaagcacaaacactcctgggattacatgtgtcctggtgtcggacatcgacacatatgat 40699949  T

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Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 534 - 669
Target Start/End: Original strand, 11734138 - 11734273
Alignment:
Q  534 taccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaatt 633  Q
    |||| ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||    
T  11734138 taccttgcaagcaatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatgacctttagcccaatt 11734237  T
Q  634 gttacccgcaccactctgaccaaacacaaagttatc 669  Q
     || || ||||||  |||||| |||||||| |||||    
T  11734238 attcccagcaccagactgaccgaacacaaaattatc 11734273  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 534 - 678
Target Start/End: Original strand, 40919556 - 40919700
Alignment:
Q  534 taccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaatt 633  Q
    |||| |||||||| || ||||||||||||||||| |  |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||    
T  40919556 taccttgcaagcagtcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgtcctttagcccaatt 40919655  T
Q  634 gttacccgcaccactctgaccaaacacaaagttatccggtctaaa 678  Q
     ||||| || ||| | || ||||||||||||||||| || |||||    
T  40919656 attaccagctccattttgtccaaacacaaagttatcaggcctaaa 40919700  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 666
Target Start/End: Complemental strand, 45319505 - 45319373
Alignment:
Q  534 taccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaatt 633  Q
    |||| ||||||||||||||||||||| | || ||||| ||||||||||||||| | ||||| ||||| || || ||||||||||| || || ||  ||||    
T  45319505 taccttgcaagcaatcacaattctcaacctccttccttacaacatcaagaacaaagtcaatgagctcggcaccctcagtgtaatgacccttggcgaaatt 45319406  T
Q  634 gttacccgcaccactctgaccaaacacaaagtt 666  Q
    ||| || ||||||  ||| ||||| ||||||||    
T  45319405 gtttccggcaccagactgtccaaatacaaagtt 45319373  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 14134825 - 14134769
Alignment:
Q  187 ctataaactatgaagcacaaaaactcctcgaattaggtgtctcctggtgacggacac 243  Q
    |||||| ||||||| |||  | ||||||||||||||| || ||||||||||||||||    
T  14134825 ctataagctatgaaacacggacactcctcgaattaggcgtgtcctggtgacggacac 14134769  T

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Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 545 - 639
Target Start/End: Complemental strand, 34839953 - 34839859
Alignment:
Q  545 caatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaattgttacc 639  Q
    ||||| ||||||||||||||||| |  |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  34839953 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgacctttcgcccaattgttacc 34839859  T

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Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 534 - 646
Target Start/End: Original strand, 53148130 - 53148242
Alignment:
Q  534 taccctgcaagcaatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaatt 633  Q
    |||| |||||||||||||||||||| |||||||| |  ||||||||||||||||| ||||| | |||||| ||||| || ||||| ||||| ||||||||    
T  53148130 taccttgcaagcaatcacaattctctgcttctttacgaacaacatcaagaacagagtcaatcaactcagcaccttcggtataatgacctttggcccaatt 53148229  T
Q  634 gttacccgcacca 646  Q
     ||||| ||||||    
T  53148230 attaccagcacca 53148242  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 393
Target Start/End: Original strand, 5577549 - 5577618
Alignment:
Q  324 acaatcagccacaaatcttgcaaaataacccacctatagcaaaattaacacatacccatcacaaattaac 393  Q
    ||||||| ||||||||| ||||||||| || || ||| |||||||||||||| |||||||||||| ||||    
T  5577549 acaatcaaccacaaatcatgcaaaatatcctacatatggcaaaattaacacacacccatcacaaactaac 5577618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 669
Target Start/End: Original strand, 45454432 - 45454556
Alignment:
Q  545 caatcacaattctcagcttctttcctgacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgccctttcgcccaattgttacccgcac 644  Q
    ||||||||||||||||| || ||||||||||||||||| || |||||||| | |||||| ||||| || || || ||||||||||| ||||| || ||||    
T  45454432 caatcacaattctcagcctccttcctgacaacatcaagcaccgaatcaatcaactcagctccttctgtatagtgacctttcgcccagttgtttccggcac 45454531  T
Q  645 cactctgaccaaacacaaagttatc 669  Q
    |   ||| ||||| |||||||||||    
T  45454532 cggactgtccaaaaacaaagttatc 45454556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 27932354 - 27932313
Alignment:
Q  194 ctatgaagcacaaaaactcctcgaattaggtgtctcctggtg 235  Q
    |||||||||||||| ||||||||||||||| || ||||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtg 27932313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 7997103 - 7997155
Alignment:
Q  191 aaactatgaagcacaaaaactcctcgaattaggtgtctcctggtgacggacac 243  Q
    |||| |||||||||||| ||| |||||||||||||| ||||| || |||||||    
T  7997103 aaacaatgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacac 7997155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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