View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19214_low_12 (Length: 332)
Name: NF19214_low_12
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 48568322 - 48568004
Alignment:
| Q |
1 |
cttcagcgactcgtggtgctggtacatagtcaatctgataatcacctttccccctggaagtaacataattttcacaaggatagatgaaaagaaatgtatc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568322 |
cttcagtgactcgtggtgctggtacatagtcaatctgataatcacctttccccctggaagtaacataattttcacaaggatagatgaaaagaaatgtatc |
48568223 |
T |
|
| Q |
101 |
tgtagtttgcaaagtgtgacatcacttaaagtatggacgaacgaaaatggatgaagataacgagagaaacatgtgaaaaaatatcaaagtttattatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48568222 |
tgtagtttgcaaagtgtgacatcacttaaagtatggacgaacgaaaatggatgaagataacgagagaaacatgtgaaaaaatatcaaagtttattatttt |
48568123 |
T |
|
| Q |
201 |
tacatcaaaaacacatccaataagtgggatctagcaaataagtcaaatttttgttcttttcttatttccattcttaattctgtttacatcatttcaactc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48568122 |
tacatcaaaaacacatccaataagtgtgatctagcaaataagtcaaatttttgttcttttcttatttccattcttaattctgtttaaatcatttcaactc |
48568023 |
T |
|
| Q |
301 |
tcttgaggctttcaaatat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48568022 |
tcttgaggctttcaaatat |
48568004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 10823011 - 10823055
Alignment:
| Q |
15 |
ggtgctggtacatagtcaatctgataatcacctttccccctggaa |
59 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10823011 |
ggtgctggcacatagtcaatctgataatcacctttccccctggaa |
10823055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 36144326 - 36144282
Alignment:
| Q |
15 |
ggtgctggtacatagtcaatctgataatcacctttccccctggaa |
59 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36144326 |
ggtgctggcacatagtcaatctgataatcacctttccctctggaa |
36144282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University