View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19214_low_14 (Length: 320)
Name: NF19214_low_14
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 2369359 - 2369567
Alignment:
| Q |
18 |
gagcttcatctgaatgcaattcatgaagattagtttatttcggttaaatatttcttagcattttgttttagttttacagtgcagaattggtcaaactata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2369359 |
gagcttcatctgaatgcaattcatgaagattagtttatttcggttaaatatttctttgcattttgttttagttttacagtgcagaattggtcaaactata |
2369458 |
T |
|
| Q |
118 |
gaaaattgttttaagaatggtt---ttcttagatctaagccagagggaaaatgcttcacttgtgaataatgtcattgatgaagattgtgatgagaaacta |
214 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
2369459 |
gaaaattgttttaagaatggtttccttcttagatctaagctagagggaaaatgcttcacttgtgaataatgtcattggtgaagattgtgatgagaaaata |
2369558 |
T |
|
| Q |
215 |
gatagttga |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
2369559 |
gatagttga |
2369567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 2369583 - 2369638
Alignment:
| Q |
255 |
ctatatattgccctatttctttgtactattatgatgaatccatattgctccttcat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2369583 |
ctatatattgccctatttctttgtactataatgatgaatccatattgctccttcat |
2369638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 2343105 - 2343164
Alignment:
| Q |
21 |
cttcatctgaatgcaattcatgaagattagtttatttcggttaaatatttcttagcattt |
80 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
2343105 |
cttcatctaaatgcatttgatgaagattagtttatttcggttaaatgattcatagcattt |
2343164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 5094344 - 5094408
Alignment:
| Q |
21 |
cttcatctgaatgcaattcatgaagattagtttatttcggttaaatatttcttagcattttgttt |
85 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||| ||||||| || |||||||||||||| |
|
|
| T |
5094344 |
cttcatctgaatgcatttgatgaagattaatttattttggttaaacgattgttagcattttgttt |
5094408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 2544398 - 2544329
Alignment:
| Q |
25 |
atctgaatgcaattcatgaagattagtttatttcggttaaatatttcttagcattttgttttagttttac |
94 |
Q |
| |
|
||||||||||| || ||||||||||||||| | | |||||| ||||||| ||||||||| |||||||| |
|
|
| T |
2544398 |
atctgaatgcacttgatgaagattagtttaatatgtttaaatgattcttagaattttgtttgagttttac |
2544329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University