View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19214_low_17 (Length: 255)

Name: NF19214_low_17
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19214_low_17
NF19214_low_17
[»] chr8 (13 HSPs)
chr8 (6-105)||(37510199-37510298)
chr8 (116-239)||(14193467-14193588)
chr8 (116-239)||(41539914-41540034)
chr8 (116-231)||(2814243-2814356)
chr8 (116-180)||(41539770-41539835)
chr8 (116-231)||(397007-397119)
chr8 (116-180)||(2814443-2814508)
chr8 (116-180)||(397204-397269)
chr8 (116-180)||(37994907-37994972)
chr8 (116-178)||(37994708-37994771)
chr8 (116-180)||(44036814-44036879)
chr8 (116-180)||(14193324-14193388)
chr8 (132-180)||(25101746-25101795)
[»] chr6 (6 HSPs)
chr6 (119-239)||(21389165-21389282)
chr6 (127-239)||(7789678-7789790)
chr6 (117-180)||(7789869-7789933)
chr6 (117-180)||(33022367-33022431)
chr6 (116-178)||(21389021-21389084)
chr6 (116-180)||(33022164-33022229)
[»] chr7 (12 HSPs)
chr7 (116-231)||(40521016-40521129)
chr7 (116-231)||(28948954-28949069)
chr7 (116-239)||(7298779-7298900)
chr7 (116-232)||(16979567-16979681)
chr7 (114-232)||(46567955-46568071)
chr7 (116-180)||(40521215-40521280)
chr7 (116-180)||(7298635-7298700)
chr7 (196-239)||(47478434-47478477)
chr7 (116-169)||(19804797-19804851)
chr7 (116-180)||(19805613-19805678)
chr7 (125-170)||(47478370-47478415)
chr7 (146-180)||(46568157-46568191)
[»] chr5 (33 HSPs)
chr5 (116-239)||(5146504-5146623)
chr5 (116-239)||(35454451-35454570)
chr5 (119-239)||(19897228-19897346)
chr5 (116-178)||(6518404-6518466)
chr5 (119-180)||(35454649-35454710)
chr5 (116-180)||(14069861-14069925)
chr5 (116-180)||(14388519-14388583)
chr5 (116-173)||(6518203-6518261)
chr5 (116-180)||(8489123-8489188)
chr5 (116-180)||(26534697-26534762)
chr5 (116-180)||(33377847-33377912)
chr5 (116-239)||(13823150-13823268)
chr5 (116-183)||(19898950-19899018)
chr5 (118-180)||(8323907-8323970)
chr5 (114-180)||(26534504-26534571)
chr5 (116-180)||(5146702-5146767)
chr5 (114-180)||(791590-791657)
chr5 (196-239)||(33377723-33377766)
chr5 (114-180)||(42630709-42630776)
chr5 (119-173)||(228990-229044)
chr5 (119-180)||(42630906-42630968)
chr5 (116-180)||(130254-130319)
chr5 (116-172)||(791810-791867)
chr5 (116-180)||(8323707-8323772)
chr5 (116-180)||(13823347-13823412)
chr5 (116-180)||(40881792-40881855)
chr5 (146-185)||(40882013-40882052)
chr5 (116-173)||(130454-130512)
chr5 (116-185)||(228717-228787)
chr5 (198-231)||(6518355-6518388)
chr5 (119-239)||(27319482-27319599)
chr5 (146-178)||(27319668-27319700)
chr5 (196-227)||(228926-228957)
[»] chr2 (21 HSPs)
chr2 (116-239)||(38085967-38086087)
chr2 (117-239)||(3671822-3671943)
chr2 (116-180)||(31470587-31470651)
chr2 (116-180)||(42028578-42028643)
chr2 (116-172)||(15330449-15330505)
chr2 (116-172)||(31470785-31470841)
chr2 (115-180)||(16115243-16115309)
chr2 (116-180)||(15332861-15332926)
chr2 (116-180)||(36059286-36059351)
chr2 (116-178)||(13280036-13280099)
chr2 (116-178)||(42028779-42028842)
chr2 (116-173)||(13279840-13279898)
chr2 (115-180)||(31860078-31860144)
chr2 (116-180)||(2059490-2059555)
chr2 (116-180)||(2059683-2059748)
chr2 (116-180)||(7317834-7317899)
chr2 (116-180)||(16115046-16115111)
chr2 (116-180)||(31860284-31860349)
chr2 (116-178)||(38086168-38086231)
chr2 (196-226)||(31470735-31470765)
chr2 (116-180)||(7317635-7317700)
[»] chr1 (27 HSPs)
chr1 (116-239)||(48752537-48752657)
chr1 (116-239)||(7062138-7062260)
chr1 (125-239)||(23346563-23346675)
chr1 (116-239)||(4156892-4157013)
chr1 (116-239)||(28217530-28217650)
chr1 (116-239)||(48871247-48871368)
chr1 (116-180)||(50893162-50893226)
chr1 (116-228)||(42180571-42180681)
chr1 (116-173)||(48871443-48871501)
chr1 (116-180)||(10227911-10227976)
chr1 (116-180)||(23346419-23346484)
chr1 (116-180)||(26552191-26552256)
chr1 (116-180)||(41834075-41834139)
chr1 (116-180)||(10227712-10227777)
chr1 (120-180)||(19059378-19059439)
chr1 (116-180)||(28217718-28217783)
chr1 (117-185)||(39669252-39669321)
chr1 (116-180)||(50892963-50893028)
chr1 (118-177)||(26551992-26552052)
chr1 (125-180)||(19059577-19059633)
chr1 (117-180)||(50904992-50905058)
chr1 (143-178)||(39669084-39669119)
chr1 (196-231)||(50893115-50893150)
chr1 (146-180)||(7062038-7062072)
chr1 (117-178)||(50905113-50905175)
chr1 (116-180)||(41833874-41833939)
chr1 (116-180)||(42180771-42180834)
[»] scaffold0140 (1 HSPs)
scaffold0140 (116-231)||(15847-15963)
[»] chr4 (14 HSPs)
chr4 (116-239)||(18936676-18936797)
chr4 (119-231)||(11147171-11147285)
chr4 (116-183)||(37177624-37177691)
chr4 (116-178)||(40533963-40534026)
chr4 (116-180)||(3102739-3102804)
chr4 (116-180)||(5121006-5121071)
chr4 (116-180)||(11147014-11147079)
chr4 (116-180)||(40534162-40534227)
chr4 (116-178)||(3102540-3102603)
chr4 (117-178)||(13690216-13690278)
chr4 (116-180)||(18381508-18381573)
chr4 (116-178)||(37177827-37177890)
chr4 (116-180)||(9231580-9231645)
chr4 (116-180)||(18936876-18936941)
[»] chr3 (14 HSPs)
chr3 (119-239)||(36635241-36635358)
chr3 (116-183)||(19580506-19580574)
chr3 (116-180)||(27073107-27073172)
chr3 (116-180)||(33214443-33214508)
chr3 (116-180)||(36635437-36635502)
chr3 (116-178)||(33219072-33219135)
chr3 (116-173)||(27072913-27072971)
chr3 (116-180)||(33214638-33214703)
chr3 (118-180)||(10598810-10598873)
chr3 (116-178)||(11651000-11651063)
chr3 (196-239)||(19580387-19580430)
chr3 (114-180)||(36274118-36274184)
chr3 (114-173)||(10599004-10599064)
chr3 (116-180)||(36274324-36274389)
[»] scaffold0214 (2 HSPs)
scaffold0214 (120-180)||(11630-11691)
scaffold0214 (116-180)||(11826-11891)
[»] scaffold0135 (1 HSPs)
scaffold0135 (116-180)||(37446-37511)
[»] scaffold0204 (2 HSPs)
scaffold0204 (116-173)||(17559-17616)
scaffold0204 (116-184)||(17470-17538)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 37510298 - 37510199
Alignment:
Q  6 aggcgacaagtattctgaacataaagagtaagataatataatttatgattggatgcatgcattcacttaaatgtgatttttataaagagaaatgctgtta 105  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37510298 aggcgacgagtattgtgaacataaagagtaagataatataatttatgattggatgcatgcattcacttaaatgtgatttttataaagagaaatgccgtta 37510199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 14193588 - 14193467
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |         |||||||||||||||||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttttt--cttcttttaaccatgattggt 14193491  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  14193490 ggtggtgaatactaactgcaaata 14193467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 41540034 - 41539914
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||            ||||||||| ||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgt---cgttttattttcttttaatcatgattggt 41539938  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  41539937 ggtggtgaatactaactgcaaata 41539914  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 2814243 - 2814356
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| ||            ||||||||||||||||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaatcatgacacgt--cgttttttttttcttttaaccatgattggt 2814340  T
Q  216 ggtggtgaatactaac 231  Q
    ||||||||||||||||    
T  2814341 ggtggtgaatactaac 2814356  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 41539770 - 41539835
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgaca 41539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 397007 - 397119
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| || ||| |||           ||||||||||||||||||||    
T  397007 gagaaattcttgtgcaggaacgaacctaactatcattcttacaaacaataaattaaaacataacacgttgttttttt---ttcttttaaccatgattggt 397103  T
Q  216 ggtggtgaatactaac 231  Q
    ||||||||||||||||    
T  397104 ggtggtgaatactaac 397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 2814508 - 2814443
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 2814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 397269 - 397204
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||| ||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgaca 397204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 37994972 - 37994907
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||| ||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgaca 37994907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 37994708 - 37994771
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||| ||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatga 37994771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 44036814 - 44036879
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||| |||||||| ||||||| ||| |||||| ||||||||||||||||| ||| ||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgaca 44036879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 14193324 - 14193388
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| |||| |||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgaca 14193388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 25101746 - 25101795
Alignment:
Q  132 ggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||| ||| |||||||||| ||||||||||| ||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgaca 25101795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 21389282 - 21389165
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggt 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |          |||||||||||||||||||||||    
T  21389282 aaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttttt---ttcttttaaccatgattggtggt 21389186  T
Q  219 ggtgaatactaactacaaata 239  Q
    |||||||||||||| ||||||    
T  21389185 ggtgaatactaactgcaaata 21389165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 7789678 - 7789790
Alignment:
Q  127 gtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggtggtgaata 226  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |          |||||||||||||||||||||||||||||||    
T  7789678 gtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacatgtcattgtttttttttcttttaaccatgattggtggtggtgaata 7789777  T
Q  227 ctaactacaaata 239  Q
    |||||| ||||||    
T  7789778 ctaactgcaaata 7789790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 7789933 - 7789869
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 7789869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 33022431 - 33022367
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca 33022367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 21389021 - 21389084
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatga 21389084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 33022164 - 33022229
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 33022229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 40521016 - 40521129
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |          ||||||||||||||||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaatatgacacgtcataattttt--ttcttttaaccatgattggt 40521113  T
Q  216 ggtggtgaatactaac 231  Q
     |||||||||||||||    
T  40521114 agtggtgaatactaac 40521129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 28949069 - 28948954
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| || |        | ||||||||||||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgtcattttttttctttcttttaaccatgattggt 28948970  T
Q  216 ggtggtgaatactaac 231  Q
    ||||||||||||||||    
T  28948969 ggtggtgaatactaac 28948954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 7298900 - 7298779
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| ||            ||||||||||||||||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacataacacgt--atttttttttttcttttaaccatgattggt 7298803  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||| | ||||||    
T  7298802 ggtggtgaatactaagtgcaaata 7298779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 16979681 - 16979567
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||| || |          ||||||||||||| ||||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaactatcattcttacaaataacaaattaaaacatgacacgtcatttttttt--ttcttttaaccataattggt 16979584  T
Q  216 ggtggtgaatactaact 232  Q
    |||||||||||||||||    
T  16979583 ggtggtgaatactaact 16979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 46567955 - 46568071
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattg 213  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| || |          |||||||||| |||||||    
T  46567955 acgaaaaattcttgtgtaggaacgaacttaactatcattcttacaaacaacaaattaaaacatgacacgtcattttattt--ttcttttaactatgattg 46568052  T
Q  214 gtggtggtgaatactaact 232  Q
    ||||| |||||||||||||    
T  46568053 gtggtagtgaatactaact 46568071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 40521280 - 40521215
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 40521215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 7298635 - 7298700
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgaca 7298700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 47478434 - 47478477
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaatactaactacaaata 239  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  47478434 ttcttttaaccatgattgatggtggtgaatactaactgcaaata 47478477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 19804797 - 19804851
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaatt 169  Q
    |||||||||||||||||||||||||| || |||| || |||||||||||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaatt 19804851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 19805678 - 19805613
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||  || ||||||| |||| ||| |||||||||||| ||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgaca 19805613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 47478370 - 47478415
Alignment:
Q  125 ttgtgtaggaacgaacccaactatcattcttacaaacaacaaatta 170  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||    
T  47478370 ttgtgtagaaacgaacttaactatcattcttacaaacaacaaatta 47478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 46568191 - 46568157
Alignment:
Q  146 tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||||| ||||||    
T  46568191 tatcattcttacaaacaacaaattaaaacatgaca 46568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 5146504 - 5146623
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||          ||||||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgttatttttt----ttcttttaaccatgattggt 5146599  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  5146600 ggtggtgaatactaactgcaaata 5146623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 35454451 - 35454570
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| || |          ||||||||||||||||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttt----ttcttttaaccatgattggt 35454546  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  35454547 ggtggtgaatactaactgcaaata 35454570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 19897228 - 19897346
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggt 218  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |        |  ||||||||||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatattttttc--tcttttaaccatgattggtggt 19897325  T
Q  219 ggtgaatactaactacaaata 239  Q
    |||||||||||||| ||||||    
T  19897326 ggtgaatactaactgcaaata 19897346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 6518466 - 6518404
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaactatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 35454710 - 35454649
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  35454710 aaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgaca 35454649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 14069861 - 14069925
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaactatcattcttataaacaacaaattaaaacatgaca 14069925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 14388583 - 14388519
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaactatcattcttacaaacaacaaattaaaacatgaca 14388519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 6518203 - 6518261
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaa 173  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaa 6518261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 8489123 - 8489188
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgaca 8489188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 26534762 - 26534697
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 26534697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 33377912 - 33377847
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 33377847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 13823150 - 13823268
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||| ||| ||||| |||||| ||            ||||||||||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaactatcattcgtataaacaataaactaaaacatgacacgt-----attttttttcttttaaccatgattggt 13823244  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||| | ||||||    
T  13823245 ggtggtgaatactaagtgcaaata 13823268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 19899018 - 19898950
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgacatgt 183  Q
    |||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||| |||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgt 19898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 8323970 - 8323907
Alignment:
Q  118 gaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca 8323907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 26534504 - 26534571
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||| ||||||    
T  26534504 acgagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgaca 26534571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 5146767 - 5146702
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||| |||||||| ||  |||||||||||||||||||||||||||| ||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgaca 5146702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 791590 - 791657
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||| ||||||||||||||||| || ||| ||| ||||||||||||||||||||| ||||||    
T  791590 acgagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgaca 791657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 33377723 - 33377766
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  33377723 ttcttttaaccatgattggtggtggtgaatactaactgcaaata 33377766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 42630709 - 42630776
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||| ||||||||| || ||||||| ||||||||||||||| ||||| ||||||    
T  42630709 acgagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgaca 42630776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 229044 - 228990
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaa 173  Q
    ||||| |||||||| |||||||  |||||||||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataactatcattcttacaaacaacaaattaaaa 228990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 42630968 - 42630906
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||| ||||||| ||| |||||| ||||||||||| ||||||||||||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgaca 42630906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 130254 - 130319
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || || |||  ||||||||||||||||||||| ||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgaca 130319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaa 172  Q
    |||||||||||||||||||||||||| || |||||||  |||||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 8323707 - 8323772
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || |||||||  |||||||||| ||||||||| ||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgaca 8323772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 13823412 - 13823347
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||  ||| ||||||| ||||||| |||||||||||| ||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgaca 13823347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 40881792 - 40881855
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| ||||||||||||||||| ||| || |||||||||||||| ||||||||| ||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaac-attattcttacaaacaataaattaaaacatgaca 40881855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 40882052 - 40882013
Alignment:
Q  146 tatcattcttacaaacaacaaattaaaatatgacatgtta 185  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40882052 tatcattcttacaaacaacaaattaaaatatgacacgtta 40882013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 130512 - 130454
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaa 173  Q
    ||||||||||| ||||| |||||||| ||| |||||| |||||||||||||||||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaa 130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 228717 - 228787
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgacatgtta 185  Q
    ||||||||  |||||||||||||||| ||| ||||||||||| |||||| ||||||||| |||||| ||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgtta 228787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 6518388 - 6518355
Alignment:
Q  198 cttttaaccatgattggtggtggtgaatactaac 231  Q
    ||||||||||||||||||||||||||||||||||    
T  6518388 cttttaaccatgattggtggtggtgaatactaac 6518355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 27319482 - 27319599
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggt 218  Q
    ||||| |||||||| || ||||  |||||||||||||||||| || ||||||||| |||| | ||||          |||||||||||||||||||||||    
T  27319482 aaatttttgtgtagtaatgaacttaactatcattcttacaaataataaattaaaacatgatacgttattttatt---ttcttttaaccatgattggtggt 27319578  T
Q  219 ggtgaatactaactacaaata 239  Q
    ||||||| ||| || ||||||    
T  27319579 ggtgaatcctagctgcaaata 27319599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 27319700 - 27319668
Alignment:
Q  146 tatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||||||||||    
T  27319700 tatcattcttacaaacaacaaattaaaatatga 27319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 228957 - 228926
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaatac 227  Q
    ||||||||||||||||||||||||||||||||    
T  228957 ttcttttaaccatgattggtggtggtgaatac 228926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 38085967 - 38086087
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||            ||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaactatcattcttacaaacaacaaattaaaacatgacacgt---cgttttattttcttttaaccatgattggt 38086063  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  38086064 ggtggtgaatactaactgcaaata 38086087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 3671822 - 3671943
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtg 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  | |         ||||||||||||||||||| ||    
T  3671822 agaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacatcatttttttt-cttcttttaaccatgattgatg 3671920  T
Q  217 gtggtgaatactaactacaaata 239  Q
    |||||||||| |||| |||||||    
T  3671921 gtggtgaatagtaaccacaaata 3671943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 31470587 - 31470651
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaacatgaca 31470651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 42028578 - 42028643
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgaca 42028643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaa 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 31470841 - 31470785
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaa 172  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaa 31470785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 16115309 - 16115243
Alignment:
Q  115 cgagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  16115309 cgagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgaca 16115243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 15332926 - 15332861
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgaca 15332861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 36059351 - 36059286
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca 36059286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 13280099 - 13280036
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 13280036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 42028842 - 42028779
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 42028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 13279840 - 13279898
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaa 173  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 13279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 31860078 - 31860144
Alignment:
Q  115 cgagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||| ||||||    
T  31860078 cgagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgaca 31860144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 2059490 - 2059555
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgaca 2059555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 2059748 - 2059683
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 2059683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 7317899 - 7317834
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||| ||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgaca 7317834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 16115046 - 16115111
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 16115111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 31860349 - 31860284
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| ||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgaca 31860284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 38086231 - 38086168
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||| ||||||||| || |||| ||| |||||||||||||||||||||||||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatga 38086168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 31470765 - 31470735
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaata 226  Q
    |||||||||||||||||||||||||||||||    
T  31470765 ttcttttaaccatgattggtggtggtgaata 31470735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 7317635 - 7317700
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||| | ||||||||||||||||| || ||||||| ||||| ||||||||| ||||| ||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgaca 7317700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 48752657 - 48752537
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| || |          ||||||||| ||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttatt---ttcttttaatcatgattggt 48752561  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  48752560 ggtggtgaatactaactgcaaata 48752537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 7062260 - 7062138
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |          |||||||||||||||||| |    
T  7062260 gagaaatttttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt-tttcttttaaccatgattgat 7062162  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  7062161 ggtggtgaatactaactgcaaata 7062138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 23346675 - 23346563
Alignment:
Q  125 ttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggtggtgaa 224  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |          |||||||||||||||||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacatgtcatttttttt--ttcttttaaccatgattggtggtggtgaa 23346578  T
Q  225 tactaactacaaata 239  Q
    |||||||| ||||||    
T  23346577 tactaactgcaaata 23346563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 4156892 - 4157013
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||| |||||| || |          ||||||||||||||||||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaactatcattcttacaaataataaattaaaacatgacacgtcatttttttt--ttcttttaaccatgattggt 4156989  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  4156990 ggtggtgaatactaactgcaaata 4157013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 28217530 - 28217650
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||| || |          ||||||||||||||||||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaattatcattcttacaaacaacaaattaaaacatgacacgtcattttttt---ttcttttaaccatgattggt 28217626  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||| ||||| ||||||    
T  28217627 ggtggtgaatagtaactgcaaata 28217650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 48871247 - 48871368
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||  | |          ||||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaataacaaattaaaacatgacacatcatttttttt--ttcttttaaccatgattggt 48871344  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||| ||||| ||||||    
T  48871345 ggtggtgaatattaactgcaaata 48871368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 50893226 - 50893162
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaactatcattattacaaacaacaaattaaaacatgaca 50893162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 42180571 - 42180681
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| |||||| || |          ||||||||||||||||||||    
T  42180571 gagaaattcttgtgtaggaacgaacctaactagcattattacaaacaacaaattaaaacatgacacgtcatatttttt--ttcttttaaccatgattggt 42180668  T
Q  216 ggtggtgaatact 228  Q
     ||||||||||||    
T  42180669 agtggtgaatact 42180681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 48871501 - 48871443
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaa 173  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaa 48871443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 10227976 - 10227911
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 10227911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 23346419 - 23346484
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgaca 23346484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 26552256 - 26552191
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 26552191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 41834139 - 41834075
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||| ||||||    
T  41834139 gagaaattcttgtgtaggaacgaacataactagcattattacaaacaacaaattaaaacatgaca 41834075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 10227712 - 10227777
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| ||||||    
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgaca 10227777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 19059378 - 19059439
Alignment:
Q  120 aattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 19059439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 28217783 - 28217718
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgaca 28217718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 39669321 - 39669252
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgacatgtta 185  Q
    |||||||||||||||| |||||||  ||| ||||||||||||||| |||||||||||| |||||| ||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgtta 39669252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 50892963 - 50893028
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||| |||||||| |||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgaca 50893028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 26551992 - 26552052
Alignment:
Q  118 gaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatg 177  Q
    |||||||||||||||||||||| | ||| |||||| ||||||||||| |||||||||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatg 26552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 19059633 - 19059577
Alignment:
Q  125 ttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||| ||| |||||| |||| ||| |||||||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgaca 19059577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 50904992 - 50905058
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaa---ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||||||| ||    ||||||| ||||||||||||| |||||| ||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgaca 50905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 39669084 - 39669119
Alignment:
Q  143 aactatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||||||||||||| ||||||||||||||    
T  39669084 aactatcattcttacaaacaataaattaaaatatga 39669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 50893150 - 50893115
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaatactaac 231  Q
    |||||||||||||||||| |||||||||||||||||    
T  50893150 ttcttttaaccatgattgatggtggtgaatactaac 50893115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 7062038 - 7062072
Alignment:
Q  146 tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||||| ||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgaca 7062072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 50905175 - 50905113
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||| |||||||  |||||| | ||| |||||||||||||||||||||||||||| ||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatga 50905113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 41833874 - 41833939
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||| ||| |||||| | ||  ||||||||||||| |||||||||||||| ||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgaca 41833939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 42180834 - 42180771
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||| | | |||||| | || |||||||||||||||||||||| ||||| ||||||    
T  42180834 gagaaattcttgtat-gaaacgaatctaaatatcattcttacaaacaacaaactaaaacatgaca 42180771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 15847 - 15963
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattgg 214  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||          |||||||||||||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattatttttttttcttttaaccatgattgg 15946  T
Q  215 tggtggtgaatactaac 231  Q
    | |||||||||| ||||    
T  15947 tagtggtgaatattaac 15963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 18936676 - 18936797
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggt 215  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||| |||| | || |         |||||||||| ||||||||||    
T  18936676 gagaaattcttgtgtatgaacgaacataactatcattcttacaaacaacaaattaaaacatgatacgtcattttttt--cttcttttaatcatgattggt 18936773  T
Q  216 ggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||| ||||||    
T  18936774 ggtggtgaatactaactgcaaata 18936797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 11147285 - 11147171
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgt--tannnnnnnnccttcttttaaccatgattggtg 216  Q
    |||||||| ||||| |||||| | |||||| |||||||||||||| |||||||||||||||||||  |         | |||||||||||||||||||||    
T  11147285 aaattcttatgtagaaacgaatctaactattattcttacaaacaataaattaaaatatgacatgtcattttttttttctttcttttaaccatgattggtg 11147186  T
Q  217 gtggtgaatactaac 231  Q
    |||||||||||||||    
T  11147185 gtggtgaatactaac 11147171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 37177624 - 37177691
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgt 183  Q
    ||||||||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||    
T  37177624 gagaaattcttctgtaggaacgaattcaattatcattcttacaaacaataaattaaaatatgacatgt 37177691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 40533963 - 40534026
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatga 40534026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 3102804 - 3102739
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 3102739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 5121071 - 5121006
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgaca 5121006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 11147014 - 11147079
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgaca 11147079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 40534227 - 40534162
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 40534162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 3102540 - 3102603
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 3102603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 13690216 - 13690278
Alignment:
Q  117 agaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 13690278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 18381573 - 18381508
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| | |||||||||||| ||||||||||||| ||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgaca 18381508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 37177890 - 37177827
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||||| |||||||||||  ||| |||||||||||||||||||||||||||| ||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatga 37177827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 9231580 - 9231645
Alignment:
Q  116 gagaaattcttgtgtaggaacgaaccca-actatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| |  ||| ||| ||||||||||||||||||||| ||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgaca 9231645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 18936941 - 18936876
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||||| |||||||||||| ||  |||||||||||||||||| ||||||||| ||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgaca 18936876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 36635241 - 36635358
Alignment:
Q  119 aaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgttannnnnnnnccttcttttaaccatgattggtggt 218  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| ||            |||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaactatcattgttacaaacaacaaattaaaacatgacacgt---attttttttttcttttaaccatgattggtggt 36635337  T
Q  219 ggtgaatactaactacaaata 239  Q
    |||||||||||| | ||||||    
T  36635338 ggtgaatactaagtgcaaata 36635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 19580574 - 19580506
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgacatgt 183  Q
    ||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgt 19580506  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 27073172 - 27073107
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 27073107  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 33214443 - 33214508
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 33214508  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 36635502 - 36635437
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgaca 36635437  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 33219072 - 33219135
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatga 178  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 33219135  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 27072913 - 27072971
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaa 173  Q
    |||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 27072971  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 33214703 - 33214638
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||| ||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgaca 33214638  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 10598810 - 10598873
Alignment:
Q  118 gaaattcttgtgtaggaacgaacccaa-ctatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||| || |||||||  |||||||||||||||||||| ||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgaca 10598873  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 11651000 - 11651063
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatga 178  Q
    ||||||||||||| || ||||||||| ||| ||||||||||||||||||||| |||||||||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatga 11651063  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 19580387 - 19580430
Alignment:
Q  196 ttcttttaaccatgattggtggtggtgaatactaactacaaata 239  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  19580387 ttcttttaaccatgattggtggtggtgaatactaactgcaaata 19580430  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 36274118 - 36274184
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  36274118 acgagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgaca 36274184  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 10599064 - 10599004
Alignment:
Q  114 acgagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaa 173  Q
    ||||||||||||||||| | |||||||| ||| |||||| |||||||||||||||||||||    
T  10599064 acgagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaa 10599004  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 36274389 - 36274324
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    ||||||||||| |||||||||||| | ||| ||||||  |||||||||||||||||||| ||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgaca 36274324  T

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Target: scaffold0214 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 11630 - 11691
Alignment:
Q  120 aattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 11691  T

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Target: scaffold0214; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 11891 - 11826
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaac-tatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 11826  T

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Target: scaffold0135 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 37446 - 37511
Alignment:
Q  116 gagaaattcttgtgtaggaacgaaccca-actatcattcttacaaacaacaaattaaaatatgaca 180  Q
    |||||||||||||||||||||||||| |  ||| ||| ||||||||||||||||||||| ||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgaca 37511  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 17616 - 17559
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaa 173  Q
    |||| ||||| ||||||||||||||  || ||||||| |||||||||| |||||||||    
T  17616 gagatattctcgtgtaggaacgaacgtaagtatcatttttacaaacaataaattaaaa 17559  T

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Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 17470 - 17538
Alignment:
Q  116 gagaaattcttgtgtaggaacgaacccaactatcattcttacaaacaacaaattaaaatatgacatgtt 184  Q
    ||||||||||||| ||||||||||   || ||||||| |||||||||  ||||||||| || |||||||    
T  17470 gagaaattcttgtataggaacgaatgtaagtatcatttttacaaacagtaaattaaaacattacatgtt 17538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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