View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_low_2 (Length: 542)
Name: NF19214_low_2
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 15547760 - 15547468
Alignment:
| Q |
1 |
tttgtaagcgcttcttaattaaatgaacaaaatcatacaagtgaagataattagtgtaaataataattgattattgttagttaaatttatagggaattta |
100 |
Q |
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| T |
15547760 |
tttgtaagcgcttcttaattaaatgaacaaaatcatacaagtgaagataattagtgtaaataataatcgattattgttagttaaatttatagggaattta |
15547661 |
T |
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| Q |
101 |
gttaaaaatgcagttacttgcataagaagtcatcatcatgtatataccttgttcgtacaccacaatgaactaatgagaatcaatgtatcttttcatttct |
200 |
Q |
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| T |
15547660 |
gttaaaaatgcagttacttgcataagaagtcatcatcatgtatataccttgttcgtacaccacaatgaactaatgagaatcaatgtatcttttcatttct |
15547561 |
T |
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| Q |
201 |
tttgtgctctcactctcacaaattctttgctcataatatggtattaaacgcaaaccttgtgattctctctgattttcattgatttcatcaaca |
293 |
Q |
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| T |
15547560 |
tttgtgctctcactctcacaaattctttgctcataatatggtattagacacaaaccttgtgattctctctgattttcattgatttcatcaaca |
15547468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 15547379 - 15547344
Alignment:
| Q |
382 |
catctgatccttgtgaatttttctataaattgcttt |
417 |
Q |
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| T |
15547379 |
catctgatccttgtgaatttttctataaattgcttt |
15547344 |
T |
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