View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_low_22 (Length: 226)
Name: NF19214_low_22
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_22 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 36008680 - 36008899
Alignment:
| Q |
7 |
catgtgtcctttttcatatatgcatggtttaattcctttgtctgagaacaatcctttatgttgaaatttttcttttgcgttgaagatattttaacaagct |
106 |
Q |
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| T |
36008680 |
catgtgtcctttttcatatatgcatggtttaattcctttgtctgagaacaatcctttatgttgaaatttttcttttgcgttgaagatattttaacaagct |
36008779 |
T |
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| Q |
107 |
ttaatgacaaaacgtggaaaagtacagaataagttagtttctacaaattcatgttgcattcattggtggccatccgaagccgcaaaagttgcccttcaaa |
206 |
Q |
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| T |
36008780 |
ttaatgacaaaacgtggaaaagtacagaataagttagtttctacaaattcatgttgcattcattggtggccatccgaagccgcaaaagttgcccttcaaa |
36008879 |
T |
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| Q |
207 |
tatgatattcctatagctgc |
226 |
Q |
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| T |
36008880 |
tatgatattcctatagctgc |
36008899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 36011417 - 36011615
Alignment:
| Q |
25 |
tatgcatggtttaattcctttgtctgagaacaatcctttatgttgaaatttttcttttgcgttgaagatattttaacaagctttaatgacaaaacgtgga |
124 |
Q |
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| T |
36011417 |
tatgtatggtttaattcctttgtctgagaacaatcctttatgttgaaatttttcttttgctttgaagatattttgactcgctttgatgacaaaaagtgga |
36011516 |
T |
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| Q |
125 |
aaagtacagaataagttagtttctacaaattc--atgttgca---ttcattggtggccatccgaagccgcaaaagttgccctt-caaatatgatattcct |
218 |
Q |
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| T |
36011517 |
aaagtaca-aataactt--tttctccaaattcatatgtttcattcttcattggtggccatccgaagccgcaaaagttgctattccaaatatgaaattcct |
36011613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 36020022 - 36020091
Alignment:
| Q |
9 |
tgtgtcctttttcatatatgcatggtttaattcctttgtctgagaac-aatcctttatgttgaaattttt |
77 |
Q |
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||||| ||||||||||||||| |||||||||||| |||| || |||| ||||||||||| |||||||||| |
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| T |
36020022 |
tgtgtactttttcatatatgcctggtttaattcccttgtatgcgaacaaatcctttatggtgaaattttt |
36020091 |
T |
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