View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_low_23 (Length: 224)
Name: NF19214_low_23
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 143432 - 143627
Alignment:
| Q |
18 |
taatggtctttgcaaatatgttgtggtgacatcaaattgttatggaaagatcattaaggaaatgaatgaacattataataaccggtggaaacattatatg |
117 |
Q |
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| T |
143432 |
taatggtctatgcaaatatgttgtggtgacatcaaattgttatggaaagatcattaaagaaatgaatgaacattataataactggtggaaacattatatg |
143531 |
T |
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| Q |
118 |
ggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaattgcaattttcttatttgctgctgtcaatattctt |
213 |
Q |
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| T |
143532 |
ggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaattgcaattttcttatttgctgctgtcaattttctt |
143627 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 106324 - 106251
Alignment:
| Q |
103 |
tggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttgg |
176 |
Q |
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| T |
106324 |
tggaagcattatatgggaatgctgagatcagtttattttcgtgatccttggagattcagctcaactattgttgg |
106251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 45958230 - 45958034
Alignment:
| Q |
18 |
taatggtctttgcaaatatgttgtggtgacatcaaattgtta-tggaaagatcattaaggaaatgaatgaacattataataaccggtggaaacattatat |
116 |
Q |
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| T |
45958230 |
taatggtctttgcaaatatgttgtggtgacatcaaattgttaatggaaagatcattaaggaaatgaatgaacattataataactggtggaaacattatat |
45958131 |
T |
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| Q |
117 |
gggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaattgcaattttcttatttgctgctgtcaatattctt |
213 |
Q |
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| T |
45958130 |
gggaatgttaaggtcagtgtactttcgtgatcctcggaggcttagttcaactgttgtgggaattgctattttcttatttgctgttgtcaattttctt |
45958034 |
T |
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