View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19214_low_6 (Length: 411)
Name: NF19214_low_6
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 1272806 - 1272420
Alignment:
| Q |
8 |
cgaagaatatgattgtttctttccttacaaagaatccaaacaaacagtatccatatcaaatgaagatcaaatttttctcgagtcgcctgtttaatttgta |
107 |
Q |
| |
|
|||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1272806 |
cgaaaaatacgattgtttctttccttccaaagaatccaaacaaacactatccatatcaaatgaagaccaaatttttctcgagtcgcctgtttcatttgta |
1272707 |
T |
|
| Q |
108 |
aattgtgcaaaatgatcaaaaatatgtaatatgtccgcagtagaaataccaagtcaatgttgaagaaatatccatatgccacctaaataagcacaaccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1272706 |
aattgtgcaaaatgatcaaaaatatgtaatatgtccgcagtagaaataccaagtcaatgttgaagaaatatccatatgccacctaaataagcacaaccca |
1272607 |
T |
|
| Q |
208 |
caaataaatgatcgatactttcctccttttcacaaccactcgaacaaagaactgaggttgtagttaaaattccatgatgaaccagcttatccttcattgc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1272606 |
caaataaatgatcgatactttcctccttttcacaaccactcgaacaaagaaatgaggttgtagttaaaattccatgatgaaccagcttatccttcattgc |
1272507 |
T |
|
| Q |
308 |
caattgattgagaagcaaccaccacacggacaaagagaccttcaaatgcaccactttatttcaaaaagtagcatagaagacataact |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1272506 |
caattgattgagaagcaaccaccacacggacaaagagaccttcaaatgcaccactttatttcaaaaagtagcatagaagacataact |
1272420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University