View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19214_low_8 (Length: 375)
Name: NF19214_low_8
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 69 - 375
Target Start/End: Complemental strand, 15547866 - 15547560
Alignment:
| Q |
69 |
cctctgggtttgaggcaaggaagtcctcaagcttaaggaataaaatcctccaagtgcgaagggcccagcttagctcgaccaagttgtggagtgaaccagg |
168 |
Q |
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| T |
15547866 |
cctctgggtttgaggcaaggaagtcctcaagcttaaggaataaaatcctccaagtgcgaagggcccagcttagctcggccaagttgtggagtgaaccagg |
15547767 |
T |
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| Q |
169 |
ataacttttgtaagcgcttcttaattaaatgaacaaaatcatacaagtgaagataattagtgtaaataataattgattattgttagttaaatttataggg |
268 |
Q |
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| T |
15547766 |
ataacttttgtaagcgcttcttaattaaatgaacaaaatcatacaagtgaagataattagtgtaaataataatcgattattgttagttaaatttataggg |
15547667 |
T |
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| Q |
269 |
aatttagttaaaaatgcagttacttgcataagaagtcatcatcatgtatataccttgttcgtacaccacaatgaactaatgagaatcaatgtatcttttc |
368 |
Q |
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| T |
15547666 |
aatttagttaaaaatgcagttacttgcataagaagtcatcatcatgtatataccttgttcgtacaccacaatgaactaatgagaatcaatgtatcttttc |
15547567 |
T |
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| Q |
369 |
atttctt |
375 |
Q |
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| T |
15547566 |
atttctt |
15547560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 15547977 - 15547939
Alignment:
| Q |
17 |
attttggcaccaaagaaatcagtgcgtggaaagttaaca |
55 |
Q |
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| T |
15547977 |
attttcgcaccaaagaaatcggtgcgtggaaagttaaca |
15547939 |
T |
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