View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19214_low_9 (Length: 373)
Name: NF19214_low_9
Description: NF19214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19214_low_9 |
 | |
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| [»] scaffold0243 (1 HSPs) |
| | |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 48 - 355
Target Start/End: Complemental strand, 22705272 - 22704965
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaataag |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
22705272 |
ttaactttggagagcaaccacagccttgcaattggaatggagtagaacagccaacacgaacacttgattaatgatgaaaactttaaataaaaagaataag |
22705173 |
T |
|
| Q |
148 |
tgctgagacaatgcaagaattagcagtagcaaaccaatgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcaacacaaaa |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22705172 |
tgctgtgacaatgcaagaattagcagtagcaaatcaacgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcaacacaaaa |
22705073 |
T |
|
| Q |
248 |
tagaataattggaatgggcataatatacactaacggtaatggaattgggtggcacgactttcaatgaaatatgaaattgcatcaatatggagcatggaat |
347 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
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| T |
22705072 |
tagaataattggaatgggcatcatatacactaacggcaatggaattggatggcacgactttcaatggaatatggaattgcatcaatatggaacatggaat |
22704973 |
T |
|
| Q |
348 |
gaattgga |
355 |
Q |
| |
|
|||||||| |
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|
| T |
22704972 |
gaattgga |
22704965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 48 - 355
Target Start/End: Original strand, 19243224 - 19243529
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaataag |
147 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
19243224 |
ttaactttggagagcaaccacagccttgcaattggaatggagtagaacagccaatgcgaacacttgattaatgatggaaactttaaataaaaagaataag |
19243323 |
T |
|
| Q |
148 |
tgctgagacaatgcaagaattagcagtagcaaaccaatgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcaacacaaaa |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
19243324 |
tgctgcgacaatgcaagaattagcagtagcaaaccaaagaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcagcacaaaa |
19243423 |
T |
|
| Q |
248 |
tagaataattggaatgggcataatatacactaacggtaatggaattgggtggcacgactttcaatgaaatatgaaattgcatcaatatggagcatggaat |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| |||||| ||||||||||||||||| |||||||| |
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|
| T |
19243424 |
tagaataattggaatgggc--aatatacactaacgacaatggaattggatgacacgactttcaatggaatatggaattgcatcaatatggaacatggaat |
19243521 |
T |
|
| Q |
348 |
gaattgga |
355 |
Q |
| |
|
|||||||| |
|
|
| T |
19243522 |
gaattgga |
19243529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 77 - 355
Target Start/End: Complemental strand, 39867753 - 39867478
Alignment:
| Q |
77 |
aattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaataagtgctgagacaatgcaagaattagcagtag |
176 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | |
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|
| T |
39867753 |
aattggaatggagtagaacatccaacgcgaacacttgattcatgatggaaactttaaataaaaagaataagtgctgcgacaatgcaagagttagcagtgg |
39867654 |
T |
|
| Q |
177 |
caaaccaatgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcaacacaaaatagaataattggaatgggcataatataca |
276 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
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|
| T |
39867653 |
taaaccagcgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcagcacaaaatagaataattagaatgggc---atataca |
39867557 |
T |
|
| Q |
277 |
ctaacggtaatggaattgggtggcacgactttcaatgaaatatgaaattgcatcaatatggagcatggaatgaattgga |
355 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
39867556 |
ctaacggcaatggaattggatggcacgactttcaatggaatatggaattgcatcaatatggaacatggaatgaattgga |
39867478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 3335499 - 3335539
Alignment:
| Q |
139 |
aagaataagtgctgagacaatgcaagaattagcagtagcaa |
179 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3335499 |
aagaataagtgctgcgacaatacaagaattagcagtagcaa |
3335539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 34360741 - 34360791
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagc |
98 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
34360741 |
ttaactttggagagcagccacgaccttgcaattggaatggaatagaacagc |
34360791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0243 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0243
Description:
Target: scaffold0243; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 48 - 351
Target Start/End: Complemental strand, 22119 - 21819
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaataag |
147 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22119 |
ttaattttggagagcaaccacagccttgcaattggaatggagtagaacagccaatgcgaacacttgattaatgatggaaactttaaataaaaagaataag |
22020 |
T |
|
| Q |
148 |
tgctgagacaatgcaagaattagcagtagcaaaccaatgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcaacacaaaa |
247 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22019 |
tgatgcgacaatgcaagaattagcagtagcaaaccaacgaatgaaaatagaccaacaagcagcaaacgattaaggattgaattaactgtgcagcacaaaa |
21920 |
T |
|
| Q |
248 |
tagaataattggaatgggcataatatacactaacggtaatggaattgggtggcacgactttcaatgaaatatgaaattgcatcaatatggagcatggaat |
347 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
21919 |
tagaataattggaatggac---atatacactaacgacaatggaattggatggcacgactttcaatggaatatggaattgcatcaatatggaacatggaat |
21823 |
T |
|
| Q |
348 |
gaat |
351 |
Q |
| |
|
|||| |
|
|
| T |
21822 |
gaat |
21819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 105596 - 105762
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaataag |
147 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
105596 |
ttaactttggagagcaaccacagccttgcaattggaatggagtagaacatccaacgcgaacacttgattaatgatggaaactttaaataaaaagaataag |
105695 |
T |
|
| Q |
148 |
tgctgagacaatgcaagaattagcagtagcaaaccaatgaatgaaaatagaccaacaagcagcaaac |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||||| |
|
|
| T |
105696 |
tgctgcgacaatgcaagaattagcagtagtaaaccaacgagtgaaaagggaccaacaagcagcaaac |
105762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 14778413 - 14778463
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagc |
98 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
14778413 |
ttaactttggagagcagccactgccttgcaattggaatggaatagaacagc |
14778463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 41829123 - 41829173
Alignment:
| Q |
47 |
attaactttggagagcgaccacagccttgcaattggaatggagtagaacag |
97 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| |||||||| |
|
|
| T |
41829123 |
attaactttggagagcagccactgccttgcaattggaatggaatagaacag |
41829173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 43098922 - 43098826
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagccaacgcgaacacttgatcaatgatggaaactttaaataaaaagaata |
145 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||||||||| || ||||| || | |||||||||| |||||| || |||||||| |
|
|
| T |
43098922 |
ttaactttggagagcagttacggccttgcaattggaatggaatagaacagccacggcaaacacctg-ttaatgatggaagctttaactagaaagaata |
43098826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 28425997 - 28425945
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaacagcca |
100 |
Q |
| |
|
||||||| ||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
28425997 |
ttaacttcggagagcagccaccgccttgcaattggaatggaatagaacagcca |
28425945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 24653988 - 24654036
Alignment:
| Q |
48 |
ttaactttggagagcgaccacagccttgcaattggaatggagtagaaca |
96 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||||| ||||||| |
|
|
| T |
24653988 |
ttaactttggagagcagccacagccttccgattggaatggaatagaaca |
24654036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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