View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19215_low_1 (Length: 398)
Name: NF19215_low_1
Description: NF19215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19215_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 41640879 - 41640507
Alignment:
| Q |
12 |
atgaacaacaactataaaattacaaaaaattactagaatcttgaatgaaaaatcaatgtaaatatgacatatcataatttttaagttcaatagtataaaa |
111 |
Q |
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| T |
41640879 |
atgatcaataactataaaattacaaaatattactagaatcttgaataaaaaatcaatgtaaatatgacatatcacaatttttaagttcaatagtataaaa |
41640780 |
T |
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| Q |
112 |
----taccaaaactagttgatattaaaattgattgcataaacttctgtttcatcaaaaagagaaatctttatccaaactctttgatccgattaaatttct |
207 |
Q |
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| T |
41640779 |
aagataccaaaactagttgatattaaaattgattgcataaacttctgtttcatcaaaaagagaaatctttatccaaactctttgatccgattaaatttct |
41640680 |
T |
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| Q |
208 |
ctctttatggtggatgaaagcaagaaaacatggtcttgattttgatattcaacaatagtagattaatctgtatttgtgtttctgttaatctattgtgtaa |
307 |
Q |
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| T |
41640679 |
ctctttatggtggatgaaagcaagaaaacatggtcttgattttgatattcaacaatagtggattaatctgtatttatgtttctgttaatctattgtgtaa |
41640580 |
T |
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| Q |
308 |
tttttagtttccttgttgtttttggtgcatccgttttattattttcatactctattttcggtttctctttatgt |
381 |
Q |
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| T |
41640579 |
tttttagtttccttgttgtttttggtgcatccgttttatta-tttcatactctattttcggtttctctttatgt |
41640507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 33144101 - 33144214
Alignment:
| Q |
224 |
aaagcaagaaaacatggtcttgattttgatattcaacaatagtagattaatctgtatttgtgtttctgttaatctattgtgtaattttt-agtttccttg |
322 |
Q |
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| T |
33144101 |
aaagcaagaaaactagggcttgattttgatattcaacaatggtggtttaatccatttttatgtttcggttaatttgctgtttattttttgattttctttg |
33144200 |
T |
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| Q |
323 |
ttgtttttggtgca |
336 |
Q |
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| T |
33144201 |
ttgtttttggtgca |
33144214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 11699147 - 11699189
Alignment:
| Q |
59 |
aaaaatcaatgtaaatatgacatatcataatttttaagttcaa |
101 |
Q |
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| T |
11699147 |
aaaattcaatttaaatatgatatatcataatttttaagttcaa |
11699189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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