View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19215_low_3 (Length: 281)

Name: NF19215_low_3
Description: NF19215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19215_low_3
NF19215_low_3
[»] chr2 (3 HSPs)
chr2 (45-267)||(52952-53174)
chr2 (54-97)||(7763660-7763703)
chr2 (59-92)||(35321195-35321228)
[»] chr3 (4 HSPs)
chr3 (48-109)||(25373629-25373690)
chr3 (48-97)||(11467769-11467818)
chr3 (52-92)||(40740228-40740268)
chr3 (48-91)||(32741116-32741159)
[»] chr6 (3 HSPs)
chr6 (48-92)||(24608309-24608353)
chr6 (50-97)||(11574459-11574505)
chr6 (48-92)||(30124180-30124224)
[»] chr7 (9 HSPs)
chr7 (49-97)||(223564-223612)
chr7 (48-112)||(10027615-10027679)
chr7 (48-91)||(9939430-9939473)
chr7 (48-87)||(11327466-11327505)
chr7 (58-97)||(26253081-26253120)
chr7 (48-91)||(29241534-29241577)
chr7 (48-91)||(36698748-36698791)
chr7 (61-110)||(19691896-19691945)
chr7 (61-109)||(24525936-24525984)
[»] chr5 (6 HSPs)
chr5 (48-92)||(31068113-31068157)
chr5 (48-114)||(39544254-39544321)
chr5 (48-113)||(41842805-41842870)
chr5 (48-97)||(8433580-8433629)
chr5 (51-91)||(15523691-15523731)
chr5 (48-92)||(35192193-35192237)
[»] chr4 (7 HSPs)
chr4 (45-97)||(31984817-31984869)
chr4 (54-97)||(3850607-3850650)
chr4 (54-92)||(979386-979424)
chr4 (48-91)||(25887289-25887332)
chr4 (48-91)||(29690938-29690981)
chr4 (48-91)||(48694728-48694771)
chr4 (61-109)||(24969242-24969290)
[»] chr1 (3 HSPs)
chr1 (54-97)||(12037601-12037644)
chr1 (49-90)||(52090046-52090087)
chr1 (48-92)||(24184496-24184540)
[»] chr8 (8 HSPs)
chr8 (48-97)||(4322490-4322539)
chr8 (48-97)||(45294584-45294633)
chr8 (48-110)||(1176230-1176292)
chr8 (58-111)||(33978669-33978722)
chr8 (48-91)||(13011912-13011955)
chr8 (48-91)||(15270130-15270173)
chr8 (48-91)||(45193863-45193906)
chr8 (48-97)||(9491946-9491995)
[»] scaffold0027 (1 HSPs)
scaffold0027 (61-111)||(4147-4197)
[»] scaffold0369 (1 HSPs)
scaffold0369 (48-91)||(14391-14434)
[»] scaffold0039 (1 HSPs)
scaffold0039 (61-100)||(106388-106427)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 45 - 267
Target Start/End: Original strand, 52952 - 53174
Alignment:
Q  45 tgagccccaaaattttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctgatcatatggatgaatgaactcatatttaaggaaga 144  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52952 tgagcccccaaattttggaggcccagctcagtagagctgcttgcaccccctcagggtcggccctgatcatatggatgaatgaactcatatttaaggaaga 53051  T
Q  145 gattgttggtgtatcaagtccattaatagcataaatgttgaataacatataatcgagaaggcacatatacccagcacaacacattaagatttttgatgaa 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53052 gattgttggtgtatcaagtccattaatagcataaatgctgaataacatataatcgagaaggcacatatacccagcacaacatattaagatttttgatgaa 53151  T
Q  245 gatgtattgtctaagtcgtttgt 267  Q
    |||||||||| ||||||||||||    
T  53152 gatgtattgtgtaagtcgtttgt 53174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 7763703 - 7763660
Alignment:
Q  54 aaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||    
T  7763703 aaattttggaagcccaactcagtagagctgtttgcaccccctca 7763660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 35321195 - 35321228
Alignment:
Q  59 ttggaggcccagctcagtagagctgtttgcaccc 92  Q
    |||||||||||| |||||||||||||||||||||    
T  35321195 ttggaggcccagttcagtagagctgtttgcaccc 35321228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 25373629 - 25373690
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  25373629 gccccaaaattttggaggcccagctcagtagagctgtttgcaccccctcatggtcggccctg 25373690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 11467818 - 11467769
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  11467818 gccctaaaattttgaaggcccagctcagtagagctgtttgcaccccctca 11467769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 40740268 - 40740228
Alignment:
Q  52 caaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    |||||||| ||||||||| ||||||||||||||||||||||    
T  40740268 caaaatttaggaggcccaactcagtagagctgtttgcaccc 40740228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 32741159 - 32741116
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  32741159 gccccaaaattggggaggcccagctcggtagagctgtttgcacc 32741116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 24608309 - 24608353
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24608309 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 24608353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 11574505 - 11574459
Alignment:
Q  50 cccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  11574505 cccaaaattttg-aggcccagctcagtagagctgtttgcaccccctca 11574459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 30124180 - 30124224
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    ||||| ||| |||||||||||| |||| |||||||||||||||||    
T  30124180 gcccccaaaatttggaggcccaactcattagagctgtttgcaccc 30124224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 223612 - 223564
Alignment:
Q  49 ccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  223612 ccccaaaattttggacgcccagctcagtagagctgtttgcaccccctca 223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 10027679 - 10027615
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctgatc 112  Q
    |||||||||||  ||||||||||||| |||||||||||||||||  | |||||  ||||||||||    
T  10027679 gccccaaaattggggaggcccagctctgtagagctgtttgcacctccccagggccggccctgatc 10027615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 9939430 - 9939473
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  9939430 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 9939473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 11327466 - 11327505
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttg 87  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  11327466 gccccaaaattggggaggcccagctcagtagagctgtttg 11327505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 26253120 - 26253081
Alignment:
Q  58 tttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  26253120 tttggaggcccagctcagaagagctgtttgcaccccctca 26253081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 29241534 - 29241577
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  29241534 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 29241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 36698748 - 36698791
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  36698748 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 36698791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 19691945 - 19691896
Alignment:
Q  61 ggaggcccagctcagtagagctgtttgcaccctctcagggttggccctga 110  Q
    ||||||||||||| || ||||||||||||||| |||||||| || |||||    
T  19691945 ggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 24525936 - 24525984
Alignment:
Q  61 ggaggcccagctcagtagagctgtttgcaccctctcagggttggccctg 109  Q
    ||||||||||||| || ||||||||||||||| ||||||| ||| ||||    
T  24525936 ggaggcccagctctgttgagctgtttgcaccccctcagggctgggcctg 24525984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 31068113 - 31068157
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  31068113 gccccaaaattttggaggcccagctcagtagagctgtctgcaccc 31068157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 39544321 - 39544254
Alignment:
Q  48 gccccaaaattttgg-aggcccagctcagtagagctgtttgcaccctctcagggttggccctgatcat 114  Q
    |||||||||||| || |||||||||||||||||||||||||||||  | ||||| |||||||||||||    
T  39544321 gccccaaaatttggggaggcccagctcagtagagctgtttgcacctccccagggatggccctgatcat 39544254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 41842870 - 41842805
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctgatca 113  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||| |||| ||  |||||||||||    
T  41842870 gcccccaaattttgaaggcccagctcagtagagctgtttgtaccccctcaaggacggccctgatca 41842805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 8433580 - 8433629
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||||| ||||    
T  8433580 gcccccaaaatttggaggcccagctcattagagctgtttgcaccccctca 8433629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 15523731 - 15523691
Alignment:
Q  51 ccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  15523731 ccaaaattggggaggcccagctcagtagagctgtttgcacc 15523691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 35192237 - 35192193
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35192237 gcccctaaaatttggaggtccagctcagtagagctgtttgcaccc 35192193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31984817 - 31984869
Alignment:
Q  45 tgagccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  31984817 tgagcccccaaattttggaggcccggctcagtagagctgtttgcaccccctca 31984869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 3850650 - 3850607
Alignment:
Q  54 aaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  3850650 aaattttggaggcccagctcagtatagctgtttgcaccccctca 3850607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 979424 - 979386
Alignment:
Q  54 aaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  979424 aaatttaggaggcccagctcagtagagctgtttgcaccc 979386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 25887289 - 25887332
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  25887289 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 25887332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 29690938 - 29690981
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  29690938 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 29690981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 48694771 - 48694728
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  48694771 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 48694728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 24969290 - 24969242
Alignment:
Q  61 ggaggcccagctcagtagagctgtttgcaccctctcagggttggccctg 109  Q
    ||||||||||||| || ||||||||||||||| ||||||| ||| ||||    
T  24969290 ggaggcccagctctgttgagctgtttgcaccccctcagggctggacctg 24969242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 12037644 - 12037601
Alignment:
Q  54 aaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  12037644 aaattttggaggcccagctcagtagagctgtttgcaccccctca 12037601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 52090087 - 52090046
Alignment:
Q  49 ccccaaaattttggaggcccagctcagtagagctgtttgcac 90  Q
    ||||||||||||||||||||| |||  |||||||||||||||    
T  52090087 ccccaaaattttggaggcccaactccatagagctgtttgcac 52090046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 24184496 - 24184540
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccc 92  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||    
T  24184496 gcccccaaaatttggaggcccagctcaatatagctgtttgcaccc 24184540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 4322490 - 4322539
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  4322490 gccccaaaatttaggaggcccagctcaatagagctgtttgcaccccctca 4322539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 45294584 - 45294633
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  45294584 gcccccaaattttggaggcccagctcattagagctgtttgcaccccctca 45294633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1176230 - 1176292
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctga 110  Q
    ||||| |||||||||||| | |||||||||||||||||||||||| |||| ||  ||||||||    
T  1176230 gcccccaaattttggaggtctagctcagtagagctgtttgcaccccctcaaggacggccctga 1176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 33978669 - 33978722
Alignment:
Q  58 tttggaggcccagctcagtagagctgtttgcaccctctcagggttggccctgat 111  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||  |||||||||    
T  33978669 tttggaggctcagctcagtagagctgtttgcaccccctcaaggccggccctgat 33978722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 13011912 - 13011955
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  13011912 gccccaaaattgtggaggcccagctctatagagctgtttgcacc 13011955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 15270130 - 15270173
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  15270130 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 15270173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 45193863 - 45193906
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  45193863 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 45193906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 9491946 - 9491995
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcaccctctca 97  Q
    ||||| ||| |||| ||| |||||||||||||||||||||||||| ||||    
T  9491946 gcccctaaaatttgaaggtccagctcagtagagctgtttgcaccccctca 9491995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 4197 - 4147
Alignment:
Q  61 ggaggcccagctcagtagagctgtttgcaccctctcagggttggccctgat 111  Q
    ||||||||||||| || |||||||||||||||||||||||  |||||||||    
T  4197 ggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 14434 - 14391
Alignment:
Q  48 gccccaaaattttggaggcccagctcagtagagctgtttgcacc 91  Q
    |||||||||||  ||||||||||||| |||||||||||||||||    
T  14434 gccccaaaattggggaggcccagctctgtagagctgtttgcacc 14391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 106427 - 106388
Alignment:
Q  61 ggaggcccagctcagtagagctgtttgcaccctctcaggg 100  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  106427 ggaggcccagctctgttgagctgtttgcaccctctcaggg 106388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University