View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19216_high_10 (Length: 449)
Name: NF19216_high_10
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 23253873 - 23253458
Alignment:
| Q |
19 |
ctaacaccatcattattcatttttcttctcagtcgaagatttcctccttcacgatctcgacgcattatttgcttccgcagctaatcactccaattcggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23253873 |
ctaacaccatcattattcatttttcttctcagtcgaagatttcctccttcacgatctcgacgcattatttgcttccgcagctaatcactccaattcggaa |
23253774 |
T |
|
| Q |
119 |
agactcaagcaggttagggttagggttagctacacactcattctgttttaatcgtttttg---aagaattgtgattattattatgtttttattattcttt |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23253773 |
agactcaagcaggttagggttag------ctacacactcattctgctttaatcgtttttgtagaagaattgtgattattattatgtttttattattctgt |
23253680 |
T |
|
| Q |
216 |
cattagtaattctaatttgaattttgtaactgtttagggtattcatcaacttctattaatagttgatgctttacatccaccagtgctaaacggtttgcag |
315 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23253679 |
tattcgtaattctaatttgaattttgtaactgtttagggtattcatcaacttctattaatagttgatgctttacatccaccagtgctaaacggtttgcag |
23253580 |
T |
|
| Q |
316 |
ctaattgaagatgctaaacggaataagcacgttttctccactggttgtgaagggtaatctctgacttaattcaagctatagtttgattatgttgttaatt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23253579 |
ctaattgaagatgctaaacggaataagcacgttttctccactggttgtgaagggtaatctctgacttaattcaagctatagtttgattatgttgttaatt |
23253480 |
T |
|
| Q |
416 |
aatatcttattatgtcttccta |
437 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
23253479 |
aatatcttattatgccttccta |
23253458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 23260981 - 23260849
Alignment:
| Q |
55 |
agatttcctccttcacgatctcgacgcattatttgcttccgcagctaatcactccaattcggaaagactcaagcaggttagggttagggttagctacaca |
154 |
Q |
| |
|
|||||||||||| || ||||||| || |||||| |||||||| ||||||||||||| ||| |||||||| | |||||||||| ||||||| ||| || |
|
|
| T |
23260981 |
agatttcctcctccatgatctcgtcgtattattcgcttccgccgctaatcactccacttcccaaagactcgactaggttagggtcagggttatctatgca |
23260882 |
T |
|
| Q |
155 |
ctcattctgttttaatcgtttttgaagaattgt |
187 |
Q |
| |
|
|| |||||| |||||| |||||| ||| |||| |
|
|
| T |
23260881 |
cttattctgcattaatcatttttgtagagttgt |
23260849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 27544800 - 27544681
Alignment:
| Q |
40 |
tttcttctcagtcgaagatttcctccttcacgatctcgacgcattatttgcttccgcagctaatcactccaattcggaaagactcaagcaggttagggtt |
139 |
Q |
| |
|
||||||||| ||| |||||||| |||| |||||||| |||||||| |||||||| ||| |||||||| || |||||||| | ||||||||||| |
|
|
| T |
27544800 |
tttcttctcggtcaaagatttcttcctccacgatcttgacgcattcc---cttccgcacctattcactccactttacaaagactcgactaggttagggtt |
27544704 |
T |
|
| Q |
140 |
agggttagctacacactcattct |
162 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
27544703 |
agggttatctacacactcattct |
27544681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 11133935 - 11134005
Alignment:
| Q |
40 |
tttcttctcagtcgaagatttcctccttcacgatctcgacgcattatttgcttccgcagctaatcactcca |
110 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||||||||||||||| | ||| | ||||||||||||| |
|
|
| T |
11133935 |
tttcttcgcagtcaaagatttcctcctccacgatctcgacgcattattcgtttctgtcgctaatcactcca |
11134005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University