View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_19 (Length: 318)
Name: NF19216_high_19
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 94 - 303
Target Start/End: Original strand, 34565788 - 34565997
Alignment:
| Q |
94 |
ttccaacccatccaacattctatagaccaagcgaatgaggaagaccaaactaatgatgatgtggttgatgacaagttagatttggaagcacaaaatgttc |
193 |
Q |
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| T |
34565788 |
ttccaacccatccaacattctatagaccaagccaatgaggaagaccaaactaatgataatgtggttgatgacaagttagatttggaagcacaaaatgttc |
34565887 |
T |
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| Q |
194 |
ctgaatagataatttgatgttttttgttaattcataaatctctttggattagtattttgttaagcctaccactttcaactttctgttggttagtattatg |
293 |
Q |
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| T |
34565888 |
ctgaatagataatttgatgtgttttgttaattcataaatctctttggattagtattttgttaagcctaccactttcaactttctgttggttagtattatg |
34565987 |
T |
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| Q |
294 |
tatttgaaat |
303 |
Q |
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|||||||||| |
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| T |
34565988 |
tatttgaaat |
34565997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 34565663 - 34565746
Alignment:
| Q |
10 |
gcaaaggcacgagcttgaagaaatgagaaatgaaagagatcaacttcaggaagaattggcaaaaacgaataaggtcgttgaaca |
93 |
Q |
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| T |
34565663 |
gcaaaggcacgagcttgaacaaatgagaaatgaaagagatcaacttcaggaagaattggcaaaaacgaataaggtcgttgaaca |
34565746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 36092153 - 36092183
Alignment:
| Q |
23 |
cttgaagaaatgagaaatgaaagagatcaac |
53 |
Q |
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| T |
36092153 |
cttgaagaaatgagaaatgaaagagatcaac |
36092183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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