View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19216_high_2 (Length: 583)
Name: NF19216_high_2
Description: NF19216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19216_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Original strand, 40753805 - 40754359
Alignment:
| Q |
19 |
cccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40753805 |
cccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttca |
40753904 |
T |
|
| Q |
119 |
caatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttat |
218 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40753905 |
caatgtaaaaaaagatgacttgaggattcctcatccctattgcacaaaacacacaaaatggaagcctccggtggaagaacgttccttaacacaaggttat |
40754004 |
T |
|
| Q |
219 |
cttttgcagctatccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctc |
318 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
40754005 |
cttttgtagctatccggttacggagtgccttccaagcaaacgccaccactttagatggtgcggggctcttccacatgtcttcaaaaactcccttttcctc |
40754104 |
T |
|
| Q |
319 |
ttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacaca |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40754105 |
ttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacaca |
40754204 |
T |
|
| Q |
419 |
tcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctcc |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
40754205 |
tcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccctacaaacaaatttcttctccatatgaacctcc |
40754304 |
T |
|
| Q |
519 |
aatccacaccctcctccactagcaccccaacttccccgacttttgcctccctttg |
573 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40754305 |
aatccactccctcctccactagcaccccaacttcccccacttttgcctccctttg |
40754359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 13854324 - 13853770
Alignment:
| Q |
19 |
cccacaccaacaatcccaatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| || ||||||| || |||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
13854324 |
cccacaccaacaatcccaatgaacaaataaattcggaggggttataaaggaacaattcatccacaccatcaatctcaaccaaaccgacctcaccacctca |
13854225 |
T |
|
| Q |
119 |
caatgtnnnnnnngatgactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttat |
218 |
Q |
| |
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|||||| | |||| || ||||| ||||||||||| ||||| ||||||||| | || || |||||||||| ||| ||||| | ||| ||||||| |
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| T |
13854224 |
caatgtagaaataggtgacacgttgattcttcatccctattacacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggttat |
13854125 |
T |
|
| Q |
219 |
cttttgcagctatccggttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctc |
318 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||||||| || || ||| |||||||||||| |||||||| |||| ||||||||| |
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| T |
13854124 |
cttttgttgctatccggttacgaagtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttcctc |
13854025 |
T |
|
| Q |
319 |
ttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacaca |
418 |
Q |
| |
|
|||| ||||| ||||||||| | ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||| |
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| T |
13854024 |
ttcaccccacccatcctcccttgaaaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccacaca |
13853925 |
T |
|
| Q |
419 |
tcaatctcttgagaccacctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctcc |
518 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||| ||||||||| |
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| T |
13853924 |
tcaagctcttgagtccacctcaactcttccaaatcctcattaagactaagcaacaattcgtcttcccacacaaacaaattccttctccatatgaacctcc |
13853825 |
T |
|
| Q |
519 |
aatccacaccctcctccactagcaccccaacttccccgacttttgcctccctttg |
573 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||| || ||||||||| |||| |
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| T |
13853824 |
aatccactccctcctccactcgcaccccaacttcccccacctttgcctccttttg |
13853770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
| Q |
255 |
caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc |
346 |
Q |
| |
|
||||||| |||||||| || ||||| |||||||||||||||| |||||| || |||| || |||||||||| | ||| || ||||||||| |
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|
| T |
8504763 |
caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc |
8504854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 420
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
| Q |
312 |
tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct |
411 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||| | |||||||| ||| || |||||||||||||| |||| ||| | |||||||| |||||||| |
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| T |
19471721 |
tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct |
19471622 |
T |
|
| Q |
412 |
ccacacatc |
420 |
Q |
| |
|
|||| |||| |
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|
| T |
19471621 |
ccactcatc |
19471613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
| Q |
190 |
tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac |
267 |
Q |
| |
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|||||| || ||||||||||||||||||| ||||| |||||||| ||| | |||||||||||| ||||||||||||| |
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|
| T |
46641722 |
tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac |
46641645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 507
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
| Q |
352 |
ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa |
451 |
Q |
| |
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||||||| || |||| ||||||||||||| ||| |||| || ||||| |||||||||||| |||| ||||||||||||| |||| | || || |
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| T |
33291113 |
ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag |
33291212 |
T |
|
| Q |
452 |
tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca |
507 |
Q |
| |
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||||||||||||||||| || || ||||| |||||| |||| || | ||||||||| |
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|
| T |
33291213 |
tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca |
33291268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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